CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

chr4.CM0175.50.nd *(Lotus japonicus)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	chr4.CM0175.50.nd	T010194_2.00	Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF115 M06657_2.00	Arabidopsis thaliana	CCGCCGYMRYHDCCR	YGGHDRYKRCGGCGG	Dap-seq OMalley et al.(2016) ERF115_col_a	0.788	0.860
ERF115 M06658_2.00	Arabidopsis thaliana	CKCCGCCGYMRYHDY	RHDRYKRCGGCGGMG	Dap-seq OMalley et al.(2016) ERF115_colamp_a	0.788	0.860
RAP2-6 M00717_2.00	Arabidopsis thaliana	NBGCYGNH	DNCRGCVN	PBM Chang et al.(2013) pTH7225	0.786	0.800
RAP2-6 M00841_2.00	Arabidopsis thaliana	NGCCGHHNNN	NNNDDCGGCN	PBM Franco-Zorrilla et al.(2014) RAP2.6	0.786	0.800
RAP2-6 M06579_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYMD	HKRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) RAP26_col_a	0.786	0.800
RAP2-6 M06580_2.00	Arabidopsis thaliana	CGCCGY	RCGGCG	Dap-seq OMalley et al.(2016) RAP26_colamp_a	0.786	0.800
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.742	0.820
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.742	0.820
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.742	0.820
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.734	0.840
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.729	0.720
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.712	0.760
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.704	0.740
ERF094 M01602_2.00	Arabidopsis thaliana	VGCCGCCD	HGGCGGCB	PBM Weirauch et al.(2014) pTH8276	0.696	0.720
ABR1 M01051_2.00	Arabidopsis thaliana	NYGSCGSCVNN	NNBGSCGSCRN	PBM Sullivan et al.(2014) pTH7383	0.685	0.720
ABR1 M06684_2.00	Arabidopsis thaliana	CKCCGCCGYMDHHNYHNHH	DDNDRNDDHKRCGGCGGMG	Dap-seq OMalley et al.(2016) ABR1_col_a	0.685	0.720
ABR1 M06685_2.00	Arabidopsis thaliana	HNNHDSCGCCGCMAWHNNNNN	NNNNNDWTKGCGGCGSHDNND	Dap-seq OMalley et al.(2016) ABR1_colamp_a	0.685	0.720
For this family, TFs with SR scores > 0.677* will likely have a similar motif*