ENSLACG00000007898 (Latimeria chalumnae)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSLACG00000007898 T014579_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.681 0.929
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.678 0.943
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.624 0.800
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.624 0.800
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.678 0.943
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.624 0.800
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.678 0.943
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.678 0.829
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.627 0.800
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.627 0.800
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.627 0.800
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.627 0.800
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.627 0.743
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.614 0.500
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.485 0.429
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.508 0.360
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000008943 ARID/BRIGHT 1 71
ENSLACP00000008944 ARID/BRIGHT 11 87

Links

Other ARID/BRIGHT family TFs
Other Latimeria chalumnae TFs

366 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACHR008952 Anopheles christyi ACHR008952 I
AEPI008594 Anopheles epiroticus AEPI008594 I
Alligator_sinensis_CCG011289.1 Alligator sinensis Alligator_sinensis_CCG011289.1 I
AMEC001670 Anopheles melas AMEC001670 I
CPIJ013490 Culex quinquefasciatus CPIJ013490 I
CpipJ_CPIJ013490 Culex pipiens CpipJ_CPIJ013490 I
D917_06432 Trichinella nativa D917_06432 I
ECANG7_01760 Echinococcus canadensis ECANG7_01760 I
ENSCSAVG00000007634 Ciona savignyi ENSCSAVG00000007634 I
ENSGALG00000000953 Gallus gallus ENSGALG00000000953 I
ENSGMOG00000015271 Gadus morhua ENSGMOG00000015271 I
ENSPFOG00000003170 Poecilia formosa ENSPFOG00000003170 I
e_gw.291.69.1 Branchiostoma floridae e_gw.291.69.1 I
MDOA005382 Musca domestica MDOA005382 I
Myotis_brandtii_TEAD3_10017764 Myotis brandtii Myotis_brandtii_TEAD3_10017764 I
PPAI001408 Phlebotomus papatasi PPAI001408 I
sd Drosophila melanogaster FBgn0003345 D
TC030781 Tribolium castaneum TC030781 I
tead1a Takifugu rubripes ENSTRUG00000005940 I
tead1b Danio rerio ENSDARG00000059483 I
TEAD3 Canis familiaris ENSCAFG00000001326 I
TEAD3 Equus caballus ENSECAG00000015056 I
TEAD3 Otolemur garnettii ENSOGAG00000002943 I
TEAD3 Microcebus murinus ENSMICG00000000029 I
TEAD3 Loxodonta africana ENSLAFG00000014818 I
TEAD4 Homo sapiens ENSG00000197905 D
Tead4 Mus musculus ENSMUSG00000030353 D
TEAD4 Meleagris gallopavo ENSMGAG00000013910 I