Gfo_R015569 (Geospiza fortis)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Gfo_R015569 T015906_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.741 0.895
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.739 0.930
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.739 0.930
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.739 0.930
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.739 0.930
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.739 0.930
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.739 0.919
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.701 0.779
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.687 0.826
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.687 0.826
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.687 0.826
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.687 0.826
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.675 0.488
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.664 0.686
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.508 0.395
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.508 0.360
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R015569 ARID/BRIGHT 10 96

Links

Other ARID/BRIGHT family TFs
Other Geospiza fortis TFs

366 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA004703 Oryza indica BGIOSGA004703 I
BGIOSGA004704 Oryza indica BGIOSGA004704 I
BGIOSGA012523 Oryza indica BGIOSGA012523 N
BGIOSGA012525 Oryza indica BGIOSGA012525 N
BRADI1G63910 Brachypodium distachyon BRADI1G63910 N
BRADI2G53495 Brachypodium distachyon BRADI2G53495 I
BRADI2G53500 Brachypodium distachyon BRADI2G53500 N
Ciclev10033384m.g Citrus clementina Ciclev10033384m.g I
F775_03183 Aegilops tauschii F775_03183 N
F775_04954 Aegilops tauschii F775_04954 N
F775_23182 Aegilops tauschii F775_23182 I
F775_23296 Aegilops tauschii F775_23296 N
F775_31089 Aegilops tauschii F775_31089 N
GRMZM2G004060 Zea mays GRMZM2G004060 I
GRMZM2G005207 Zea mays GRMZM2G005207 I
GRMZM2G029282 Zea mays GRMZM2G029282 N
LPERR03G13630 Leersia perrieri LPERR03G13630 N
LPERR05G16160 Leersia perrieri LPERR05G16160 N
MLOC_34506 Hordeum vulgare MLOC_34506 N
MLOC_57764 Hordeum vulgare MLOC_57764 N
OB01G44140 Oryza brachyantha OB01G44140 I
OB01G44150 Oryza brachyantha OB01G44150 I
OB03G25300 Oryza brachyantha OB03G25300 N
OBART01G35310 Oryza barthii OBART01G35310 I
OBART01G35350 Oryza barthii OBART01G35350 I
OBART03G15470 Oryza barthii OBART03G15470 N
OGLUM03G15660 Oryza glumaepatula OGLUM03G15660 N
OLONG_001744 Oryza longistaminata OLONG_001744 N
OMERI01G32480 Oryza meridionalis OMERI01G32480 I
OMERI01G32490 Oryza meridionalis OMERI01G32490 I
ONIVA01G40340 Oryza nivara ONIVA01G40340 I
ONIVA01G40370 Oryza nivara ONIVA01G40370 I
ONIVA03G16490 Oryza nivara ONIVA03G16490 N
OPUNC01G34270 Oryza punctata OPUNC01G34270 N
OPUNC01G34280 Oryza punctata OPUNC01G34280 I
OPUNC03G15030 Oryza punctata OPUNC03G15030 N
orange1.1g018407m.g Citrus sinensis orange1.1g018407m.g I
ORGLA01G0291800 Oryza glaberrima ORGLA01G0291800 I
ORGLA01G0291900 Oryza glaberrima ORGLA01G0291900 I
ORGLA03G0148400 Oryza glaberrima ORGLA03G0148400 N
ORUFI01G38660 Oryza rufipogon ORUFI01G38660 I
ORUFI01G38670 Oryza rufipogon ORUFI01G38670 I
ORUFI03G16080 Oryza rufipogon ORUFI03G16080 N
OS01G0820700 Oryza sativa OS01G0820700 I
OS03G0321700 Oryza sativa OS03G0321700 N
Pavir.Ca00085 Panicum virgatum Pavir.Ca00085 N
Pavir.Ea03256 Panicum virgatum Pavir.Ea03256 N
PGSC0003DMG400017990 Solanum tuberosum PGSC0003DMG400017990 I
Sb08g002520 Sorghum bicolor Sb08g002520 I
Sb09g023500 Sorghum bicolor Sb09g023500 N
Si003782m.g Setaria italica Si003782m.g N
Si010813m.g Setaria italica Si010813m.g N
Si027328m.g Setaria italica Si027328m.g N
Si027946m.g Setaria italica Si027946m.g N
TRAES3BF081400030CFD_g Triticum aestivum TRAES3BF081400030CFD_g I
Traes_3AL_2297D6E18 Triticum aestivum Traes_3AL_2297D6E18 I
Traes_3DL_48F7A19D2 Triticum aestivum Traes_3DL_48F7A19D2 I
Traes_4AS_70DF607CC Triticum aestivum Traes_4AS_70DF607CC N
Traes_4BL_A8C6FBEB6 Triticum aestivum Traes_4BL_A8C6FBEB6 N
Traes_4DL_3140A8240 Triticum aestivum Traes_4DL_3140A8240 N
TRIUR3_06231 Triticum urartu TRIUR3_06231 N
TRIUR3_16097 Triticum urartu TRIUR3_16097 N