Bostr.20129s0090 (Boechera stricta)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Bostr.20129s0090 T016056_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.667 0.776
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.659 0.824
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.20129s0090.1.p ARID/BRIGHT 151 236

Links

Other ARID/BRIGHT family TFs
Other Boechera stricta TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29955.m001177 Ricinus communis 29955.m001177 I
AMTR_s00040p00057740 Amborella trichopoda AMTR_s00040p00057740 I
chr4.CM0337.330.nc Lotus japonicus chr4.CM0337.330.nc I
chr6.CM0314.840.nd Lotus japonicus chr6.CM0314.840.nd N
Ciclev10002029m.g Citrus clementina Ciclev10002029m.g I
Cla000389 Citrullus lanatus Cla000389 I
Cucsa.184670 Cucumis sativus Cucsa.184670 I
Eucgr.G00615 Eucalyptus grandis Eucgr.G00615 I
gene11837-v1.0-hybrid Fragaria vesca gene11837-v1.0-hybrid N
GLYMA05G25200 Glycine max GLYMA05G25200 I
GLYMA08G08220 Glycine max GLYMA08G08220 N
GLYMA15G05440 Glycine max GLYMA15G05440 N
Gorai.005G078500 Gossypium raimondii Gorai.005G078500 N
Gorai.005G259700 Gossypium raimondii Gorai.005G259700 I
MDP0000198495 Malus domestica MDP0000198495 I
PGSC0003DMG400029774 Solanum tuberosum PGSC0003DMG400029774 I
Pm004043 Prunus mume Pm004043 I
PRUPE_ppa025544mg Prunus persica PRUPE_ppa025544mg I
VIT_12s0055g00420 Vitis vinifera VIT_12s0055g00420 I
VIT_18s0072g00470 Vitis vinifera VIT_18s0072g00470 N