GPLIN_000967000 (Globodera pallida)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 GPLIN_000967000 T016547_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.733 0.860
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.668 0.733
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.668 0.733
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.668 0.733
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.668 0.733
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.668 0.733
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.668 0.733
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.660 0.686
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.660 0.686
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.660 0.686
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.660 0.686
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.637 0.628
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.618 0.395
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.606 0.698
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.540 0.360
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.508 0.326
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_000967000 ARID/BRIGHT 290 376

Links

Other ARID/BRIGHT family TFs
Other Globodera pallida TFs

390 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL014670 Aedes aegypti AAEL014670 I
ACHR008952 Anopheles christyi ACHR008952 I
AEPI008594 Anopheles epiroticus AEPI008594 I
AGAP000512 Anopheles gambiae AGAP000512 I
Alligator_sinensis_CCG011289.1 Alligator sinensis Alligator_sinensis_CCG011289.1 I
Alligator_sinensis_CCG020461.1 Alligator sinensis Alligator_sinensis_CCG020461.1 I
Aqu1.216869 Amphimedon queenslandica Aqu1.216869 I
AQUA008219 Anopheles quadriannulatus AQUA008219 I
BGIBMGA001129 Bombyx mori BGIBMGA001129 I
CBG02541 Caenorhabditis briggsae CBG02541 I
CBN00477 Caenorhabditis brenneri CBN00477 I
CBN16859 Caenorhabditis brenneri CBN16859 I
Cmyd_10014175 Chelonia mydas Cmyd_10014175 I
CPIJ013490 Culex quinquefasciatus CPIJ013490 I
CpipJ_CPIJ013490 Culex pipiens CpipJ_CPIJ013490 I
D915_00206 Fasciola hepatica D915_00206 I
D917_06432 Trichinella nativa D917_06432 I
D918_02241 Trichuris suis D918_02241 I
ECANG7_01760 Echinococcus canadensis ECANG7_01760 I
EFV53558 Trichinella spiralis EFV53558 I
egl-44 Caenorhabditis elegans WBGene00001208 I
ENSAMEG00000000632 Ailuropoda melanoleuca ENSAMEG00000000632 I
ENSCING00000019408 Ciona intestinalis ENSCING00000019408 I
ENSCJAG00000018829 Callithrix jacchus ENSCJAG00000018829 I
ENSCSAVG00000007634 Ciona savignyi ENSCSAVG00000007634 I
ENSDORG00000004435 Dipodomys ordii ENSDORG00000004435 I
ENSEEUG00000001836 Erinaceus europaeus ENSEEUG00000001836 I
ENSFALG00000003635 Ficedula albicollis ENSFALG00000003635 I
ENSFALG00000004805 Ficedula albicollis ENSFALG00000004805 I
ENSGALG00000000953 Gallus gallus ENSGALG00000000953 I
ENSGMOG00000010731 Gadus morhua ENSGMOG00000010731 I
ENSGMOG00000015271 Gadus morhua ENSGMOG00000015271 I
ENSLACG00000009209 Latimeria chalumnae ENSLACG00000009209 I
ENSLACG00000013349 Latimeria chalumnae ENSLACG00000013349 I
ENSLACG00000016444 Latimeria chalumnae ENSLACG00000016444 I
ENSLOCG00000004054 Lepisosteus oculatus ENSLOCG00000004054 I
ENSLOCG00000009736 Lepisosteus oculatus ENSLOCG00000009736 I
ENSLOCG00000016688 Lepisosteus oculatus ENSLOCG00000016688 I
ENSMEUG00000005884 Macropus eugenii ENSMEUG00000005884 I
ENSMPUG00000003624 Mustela putorius furo ENSMPUG00000003624 I
ENSMPUG00000009377 Mustela putorius furo ENSMPUG00000009377 N
ENSNLEG00000002771 Nomascus leucogenys ENSNLEG00000002771 I
ENSNLEG00000008666 Nomascus leucogenys ENSNLEG00000008666 I
ENSOARG00000012126 Ovis aries ENSOARG00000012126 I
ENSOCUG00000015389 Oryctolagus cuniculus ENSOCUG00000015389 I
ENSONIG00000012323 Oreochromis niloticus ENSONIG00000012323 I
ENSONIG00000014698 Oreochromis niloticus ENSONIG00000014698 I
ENSP00000310701-D4 Bos grunniens ENSP00000310701-D4 I
ENSP00000349828 Macaca fascicularis ENSP00000349828 I
ENSPANG00000018522 Papio anubis ENSPANG00000018522 I
ENSPFOG00000003170 Poecilia formosa ENSPFOG00000003170 I
ENSPFOG00000013997 Poecilia formosa ENSPFOG00000013997 I
ENSPPYG00000016530 Pongo abelii ENSPPYG00000016530 I
ENSPSIG00000006176 Pelodiscus sinensis ENSPSIG00000006176 I
ENSPSIG00000017283 Pelodiscus sinensis ENSPSIG00000017283 N
ENSSHAG00000011218 Sarcophilus harrisii ENSSHAG00000011218 I
ENSSHAG00000015930 Sarcophilus harrisii ENSSHAG00000015930 I
ENSSTOG00000010621 Ictidomys tridecemlineatus ENSSTOG00000010621 I
ENSSTOG00000024296 Ictidomys tridecemlineatus ENSSTOG00000024296 I
ENSTSYG00000006048 Tarsius syrichta ENSTSYG00000006048 I
e_gw.291.69.1 Branchiostoma floridae e_gw.291.69.1 I
GA21152 Drosophila pseudoobscura FBgn0081140 I
HelroG146479 Helobdella robusta HelroG146479 I
NEMVEDRAFT_v1g86806 Nematostella vectensis NEMVEDRAFT_v1g86806 I
nRc.2.0.1.g07693 Romanomermis culicivorax nRc.2.0.1.g07693 I
Ogr10124 Ophisaurus gracilis Ogr10124 I
Ogr18322 Ophisaurus gracilis Ogr18322 I
PPAI001408 Phlebotomus papatasi PPAI001408 I
Pvit_05988 Pogona vitticeps Pvit_05988 I
sd Drosophila melanogaster FBgn0003345 D
SMAR011013 Strigamia maritima SMAR011013 I
SMAR013465 Strigamia maritima SMAR013465 I
SMRZ_0002317401 Schistosoma margrebowiei SMRZ_0002317401 I
SMTD_0001953201 Schistosoma mattheei SMTD_0001953201 I
SROB_0002407501 Schistosoma rodhaini SROB_0002407501 I
TEAD1 Microcebus murinus ENSMICG00000007178 I
Tead1 Mus musculus ENSMUSG00000055320 D
TEAD1 Pteropus vampyrus ENSPVAG00000001503 I
tead1 Xenopus tropicalis XB-GENE-5909149 I
tead1a Danio rerio ENSDARG00000028159 I
tead1a Gasterosteus aculeatus ENSGACG00000003385 I
tead1a Takifugu rubripes ENSTRUG00000005940 I
tead1b Danio rerio ENSDARG00000059483 I
tead1b Gasterosteus aculeatus ENSGACG00000015715 I
tead1b Oryzias latipes ENSORLG00000007439 I
TEAD2 Erinaceus europaeus ENSEEUG00000012244 I
Tead2 Mus musculus ENSMUSG00000030796 D
TEAD2 Sus scrofa ENSSSCG00000025568 I
TEAD3 Anolis carolinensis ENSACAG00000009142 I
TEAD3 Bos taurus ENSBTAG00000019495 I
TEAD3 Canis familiaris ENSCAFG00000001326 I
TEAD3 Dasypus novemcinctus ENSDNOG00000023623 I
Tead3 Dipodomys ordii ENSDORG00000010798 I
TEAD3 Equus caballus ENSECAG00000015056 I
TEAD3 Echinops telfairi ENSETEG00000013332 I
TEAD3 Felis catus ENSFCAG00000012905 I
TEAD3 Homo sapiens ENSG00000007866 D
TEAD3 Gorilla gorilla ENSGGOG00000001847 I
TEAD3 Loxodonta africana ENSLAFG00000014818 I
TEAD3 Microcebus murinus ENSMICG00000000029 I
TEAD3 Macaca mulatta ENSMMUG00000015909 I
TEAD3 Oryctolagus cuniculus ENSOCUG00000004072 I
TEAD3 Otolemur garnettii ENSOGAG00000002943 I
TEAD3 Ochotona princeps ENSOPRG00000007780 I
TEAD3 Procavia capensis ENSPCAG00000010213 I
TEAD3 Pan troglodytes ENSPTRG00000018086 I
TEAD3 Pteropus vampyrus ENSPVAG00000002764 I
Tead3 Rattus norvegicus ENSRNOG00000000506 I
TEAD3 Sorex araneus ENSSARG00000008305 I
TEAD3 Sus scrofa ENSSSCG00000001544 I
TEAD3 Taeniopygia guttata ENSTGUG00000001691 I
TEAD3 Tursiops truncatus ENSTTRG00000009434 I
tead3a Gasterosteus aculeatus ENSGACG00000009758 I
tead3a Oryzias latipes ENSORLG00000008361 I
tead3a Tetraodon nigroviridis ENSTNIG00000015031 I
tead3a Takifugu rubripes ENSTRUG00000011546 I
tead3b Takifugu rubripes ENSTRUG00000018177 I
TEAD4 Bos taurus ENSBTAG00000019788 I
TEAD4 Canis familiaris ENSCAFG00000015522 N
TEAD4 Callithrix jacchus ENSCJAG00000023239 I
TEAD4 Cavia porcellus ENSCPOG00000020720 I
TEAD4 Dasypus novemcinctus ENSDNOG00000030589 I
TEAD4 Equus caballus ENSECAG00000011303 I
TEAD4 Felis catus ENSFCAG00000000150 N
TEAD4 Homo sapiens ENSG00000197905 D
TEAD4 Gallus gallus ENSGALG00000014342 N
TEAD4 Gorilla gorilla ENSGGOG00000006216 I
TEAD4 Loxodonta africana ENSLAFG00000006998 I
TEAD4 Meleagris gallopavo ENSMGAG00000013910 I
TEAD4 Microcebus murinus ENSMICG00000000108 I
TEAD4 Macaca mulatta ENSMMUG00000011299 I
Tead4 Mus musculus ENSMUSG00000030353 D
TEAD4 Ornithorhynchus anatinus ENSOANG00000001389 I
TEAD4 Oryzias latipes ENSORLG00000002553 I
TEAD4 Procavia capensis ENSPCAG00000013738 I
TEAD4 Pteropus vampyrus ENSPVAG00000013230 I
Tead4 Rattus norvegicus ENSRNOG00000005608 I
TEAD4 Sus scrofa ENSSSCG00000000736 I
TEAD4 Taeniopygia guttata ENSTGUG00000013161 N
TEAD4 Tetraodon nigroviridis ENSTNIG00000003414 N
TEAD4 Takifugu rubripes ENSTRUG00000016489 I
tetur34g00910 Tetranychus urticae tetur34g00910 I
TsM_000210300 Taenia solium TsM_000210300 I
XP_002943057 Xenopus tropicalis XP_002943057 I