TCNE_0001142701 (Toxocara canis)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 TCNE_0001142701 T016735_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.671 0.984
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.643 0.823
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.643 0.823
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.643 0.823
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.643 0.823
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.643 0.823
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.643 0.823
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.619 0.790
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.619 0.790
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.619 0.790
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.619 0.790
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.619 0.742
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.593 0.452
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.581 0.823
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.504 0.419
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.489 0.419
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TCNE_0001142701-mRNA-1 ARID/BRIGHT 1 62

Links

Other ARID/BRIGHT family TFs
Other Toxocara canis TFs

368 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACHR008952 Anopheles christyi ACHR008952 I
AEPI008594 Anopheles epiroticus AEPI008594 I
AQUA008219 Anopheles quadriannulatus AQUA008219 I
BGIBMGA001129 Bombyx mori BGIBMGA001129 I
CPIJ013490 Culex quinquefasciatus CPIJ013490 I
CpipJ_CPIJ013490 Culex pipiens CpipJ_CPIJ013490 I
D918_02241 Trichuris suis D918_02241 I
ENSCSAVG00000007634 Ciona savignyi ENSCSAVG00000007634 I
ENSGMOG00000015271 Gadus morhua ENSGMOG00000015271 I
ENSNLEG00000008666 Nomascus leucogenys ENSNLEG00000008666 I
ENSONIG00000014698 Oreochromis niloticus ENSONIG00000014698 I
ENSPANG00000018522 Papio anubis ENSPANG00000018522 I
ENSSHAG00000015930 Sarcophilus harrisii ENSSHAG00000015930 I
e_gw.291.69.1 Branchiostoma floridae e_gw.291.69.1 I
HelroG146479 Helobdella robusta HelroG146479 I
PPAI001408 Phlebotomus papatasi PPAI001408 I
SMTD_0001953201 Schistosoma mattheei SMTD_0001953201 I
SNAPOd2T00025282001 Oikopleura dioica SNAPOd2T00025282001 N
SROB_0002407501 Schistosoma rodhaini SROB_0002407501 I
TEAD1 Microcebus murinus ENSMICG00000007178 I
tead1b Danio rerio ENSDARG00000059483 I
TEAD3 Macaca mulatta ENSMMUG00000015909 I
TEAD3 Pan troglodytes ENSPTRG00000018086 I
TEAD3 Microcebus murinus ENSMICG00000000029 I
Tead3 Dipodomys ordii ENSDORG00000010798 I
TEAD4 Macaca mulatta ENSMMUG00000011299 I
TEAD4 Meleagris gallopavo ENSMGAG00000013910 I