CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

BGIOSGA000456 *(Oryza indica)* AT hook
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02178 (AT_hook)	IPR017956	BGIOSGA000456	T017240_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
NCU01145 M01693_2.00	Neurospora crassa	RWATAWWTNN	NNAWWTATWY	PBM Weirauch et al.(2014) pTH8916	0.991	0.429
athp-3 M01691_2.00	Caenorhabditis elegans	NNDDWDH	DHWHHNN	PBM Weirauch et al.(2014) pTH9097	0.991	0.397
hmg-12 M01690_2.00	Caenorhabditis elegans	NNAWWTAWWTNN	NNAWWTAWWTNN	PBM Weirauch et al.(2014) pTH8997	0.991	0.395
HMGA M01671_2.00	Arabidopsis thaliana	NNNNDWAWH	DWTWHNNNN	PBM Weirauch et al.(2014) pTH7395	0.991	0.381
ANIA_01690 M01675_2.00	Aspergillus nidulans	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH8216	0.991	0.381
HMG-I Y M02652_2.00	Pisum sativum	NDWVAAANRVMRWMAY	RTKWYKBYNTTTBWHN	SELEX Mathelier et al.(2014) MA0045.1	0.991	0.381
Hmga2 M00751_2.00	Mus musculus	NNNNRHWWNN	NNWWDYNNNN	PBM Weirauch et al.(2013) pTH3046	0.991	0.333
FGRRES_05233 M01104_2.00	Fusarium graminearum	NNNDWWAWWH	DWWTWWHNNN	PBM Lambert et al.(2019) pTH11377	0.991	0.333
NCU05635 M01694_2.00	Neurospora crassa	NNNWWWWNNN	NNNWWWWNNN	PBM Weirauch et al.(2014) pTH8863	0.991	0.333
HMGA1 M09769_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_01	0.991	0.333
HMGA1 M09770_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_Q4	0.991	0.333
ENSPPYG00000004736 M01685_2.00	Pongo abelii	NNNNDWWW	WWWHNNNN	PBM Weirauch et al.(2014) pTH9279	0.991	0.317
HMGA2 M09771_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGA2_01	0.991	0.317
FGRRES_17512 M01105_2.00	Fusarium graminearum	NNNDNWWWW	WWWWNHNNN	PBM Lambert et al.(2019) pTH11412	0.991	0.270
AHL13 M01672_2.00	Arabidopsis thaliana	NAWWTAWWWN	NWWWTAWWTN	PBM Weirauch et al.(2014) pTH8202	0.991	0.254
BRADI3G55950 M01673_2.00	Brachypodium distachyon	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH9369	0.991	0.254
OS02G0824300 M01688_2.00	Oryza sativa	NNDWAWWN	NWWTWHNN	PBM Weirauch et al.(2014) pTH8406	0.991	0.254
VIT_08s0007g04020 M01689_2.00	Vitis vinifera	DBNDDDDDDN	NHHHHHHNVH	PBM Weirauch et al.(2014) pTH9295	0.991	0.254
TVAG_474020 M01106_2.00	Trichomonas vaginalis	DNWWWAWW	WWTWWWNH	PBM Lambert et al.(2019) pTH11493	0.991	0.254
SUM1 M00008_2.00	Saccharomyces cerevisiae	NNDWWWH	DWWWHNN	PBM Badis et al.(2008) SUM1_2124	0.991	0.206
SUM1 M07439_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0398.1	0.991	0.206
SUM1 M08478_2.00	Saccharomyces cerevisiae	RYGWCASWAAW	WTTWSTGWCRY	Misc DeBoer et al.(2011) YDR310C_383	0.991	0.206
SUM1 M08479_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	Misc DeBoer et al.(2011) YDR310C_478	0.991	0.206
Q7DLU9_PEA M09772_2.00	Pisum sativum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$HMGIY_01	0.991	0.206
MTR_4g101990 M01687_2.00	Medicago truncatula	AAAWTAAT	ATTAWTTT	PBM Weirauch et al.(2014) pTH9209	0.991	0.175
PK00377.1 M01107_2.00	Cannabis sativa	DAWWWAWW	WWTWWWTH	PBM Lambert et al.(2019) pTH11338	0.991	0.175
kmt2cb M01679_2.00	Danio rerio	WWAWAWAT	ATWTWTWW	PBM Weirauch et al.(2014) pTH7876	0.991	0.159
BRADI5G22430 M01674_2.00	Brachypodium distachyon	VNRDDDHDD	HHDHHHYNB	PBM Weirauch et al.(2014) pTH9242	0.991	0.143
Setbp1 M01683_2.00	Mus musculus	NDNNNNNNHN	NDNNNNNNHN	PBM Weirauch et al.(2014) pTH1294	0.991	0.143
PHF21A M01103_2.00	Monodelphis domestica	NNNAWATWAATN	NATTWATWTNNN	PBM Lambert et al.(2019) pTH9309	0.991	0.127
PHF21A M01682_2.00	Monodelphis domestica	NNNNNHRH	DYDNNNNN	PBM Weirauch et al.(2014) pTH9335	0.991	0.127
Phf21a M01684_2.00	Mus musculus	NNNATATWAATN	NATTWATATNNN	PBM Weirauch et al.(2014) pTH8550	0.991	0.127
Xrp1 M01686_2.00	Drosophila melanogaster	NNNNDWAWW	WWTWHNNNN	PBM Weirauch et al.(2014) pTH9260	0.991	0.127
PK26376.1 M01108_2.00	Cannabis sativa	DDWWWAWW	WWTWWWHH	PBM Lambert et al.(2019) pTH11261	0.991	0.127
Xrp1 M05900_2.00	Drosophila melanogaster	RTKRYGYAAT	ATTRCRYMAY	B1H Zhu et al.(2011) Xrp1_CG6272_SANGER_5_FBgn0261113	0.991	0.127
ATEG_07399 M01676_2.00	Aspergillus terreus	DHNNHNDWWW	WWWHNDNNDH	PBM Weirauch et al.(2014) pTH9237	0.991	0.111
ENSACAG00000014978 M01677_2.00	Anolis carolinensis	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9222	0.991	0.111
phf21ab M01678_2.00	Danio rerio	NNNDNADW	WHTNHNNN	PBM Weirauch et al.(2014) pTH9254	0.991	0.111
phf21ab M01680_2.00	Gasterosteus aculeatus	AAAAWAAA	TTTWTTTT	PBM Weirauch et al.(2014) pTH9180	0.991	0.111
PHF21A M01681_2.00	Meleagris gallopavo	HDNHNNDNHD	HDNHNNDNHD	PBM Weirauch et al.(2014) pTH7875	0.991	0.111
Ahctf1 M00750_2.00	Mus musculus	AAAWAWAW	ATWTWTTT	PBM Weirauch et al.(2013) pTH2361	0.991	0.111
estExt_fgeneshNG_pg.C_820014 M01692_2.00	Naegleria gruberi	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9380	0.991	0.111
SUM1 M01517_2.00	Saccharomyces cerevisiae	NNNDWAWW	WWTWHNNN	PBM Zhu et al.(2009) Sum1	0.991	0.000
For this family, TFs with SR scores > 0.990* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
BGIOSGA000456-PA	AT hook	212	224	PKQRGRPRKTITT
BGIOSGA000456-PA	AT hook	234	246	KRPRGRPRKYPLP
BGIOSGA000456-PA	AT hook	295	307	RKGRGRPRKKPVE
BGIOSGA000456-PA	AT hook	335	347	KKKRGRPRKYPAP
BGIOSGA000456-PA	AT hook	540	550	KKGRGRPRKQP

Links
Other AT hook family TFs
Other *Oryza indica* TFs

1072 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Aan_R007397	Calypte anna	Aan_R007397	I	0.000
Afo_R006360	Aptenodytes forsteri	Afo_R006360	I	0.000
Alligator_sinensis_CCG006744.1	Alligator sinensis	Alligator_sinensis_CCG006744.1	I	0.000
Brh_R013202	Buceros rhinoceros	Brh_R013202	I	0.000
ENSAMEG00000000192	Ailuropoda melanoleuca	ENSAMEG00000000192	I	0.000
ENSAPLG00000006384	Anas platyrhynchos	ENSAPLG00000006384	I	0.000
ENSCPOG00000003269	Cavia porcellus	ENSCPOG00000003269	I	0.000
ENSCSAG00000016522	Chlorocebus sabaeus	ENSCSAG00000016522	I	0.000
ENSDORG00000003797	Dipodomys ordii	ENSDORG00000003797	I	0.000
ENSFALG00000009227	Ficedula albicollis	ENSFALG00000009227	I	0.000
ENSLACG00000017771	Latimeria chalumnae	ENSLACG00000017771	I	0.000
ENSMICG00000008878	Microcebus murinus	ENSMICG00000008878	I	0.000
ENSMPUG00000002301	Mustela putorius furo	ENSMPUG00000002301	I	0.000
ENSNLEG00000016679	Nomascus leucogenys	ENSNLEG00000016679	I	0.000
ENSOARG00000004333	Ovis aries	ENSOARG00000004333	I	0.000
ENSP00000371661	Macaca fascicularis	ENSP00000371661	I	0.000
ENSP00000371661-D1	Bos grunniens	ENSP00000371661-D1	I	0.000
ENSPANG00000024022	Papio anubis	ENSPANG00000024022	I	0.000
ENSPSIG00000017051	Pelodiscus sinensis	ENSPSIG00000017051	I	0.000
ENSSHAG00000015746	Sarcophilus harrisii	ENSSHAG00000015746	I	0.000
ENSSTOG00000000960	Ictidomys tridecemlineatus	ENSSTOG00000000960	I	0.000
ENSTSYG00000014055	Tarsius syrichta	ENSTSYG00000014055	I	0.000
Gfo_R010322	Geospiza fortis	Gfo_R010322	I	0.000
LCORL	Pteropus vampyrus	ENSPVAG00000013601	I	0.000
LCORL	Gorilla gorilla	ENSGGOG00000014894	I	0.000
LCORL	Sus scrofa	ENSSSCG00000008748	I	0.000
LCORL	Taeniopygia guttata	ENSTGUG00000009625	I	0.000
LCORL	Tursiops truncatus	ENSTTRG00000016951	I	0.000
LCORL	Vicugna pacos	ENSVPAG00000010356	I	0.000
LCORL	Dasypus novemcinctus	ENSDNOG00000001545	I	0.000
lcorl	Danio rerio	ENSDARG00000070098	I	0.000
LCORL	Canis familiaris	ENSCAFG00000016672	I	0.000
LCORL	Bos taurus	ENSBTAG00000046561	I	0.000
LCORL	Procavia capensis	ENSPCAG00000007105	I	0.000
LCORL	Gallus gallus	ENSGALG00000014421	I	0.000
LCORL	Homo sapiens	ENSG00000178177	D	0.000
LCORL	Loxodonta africana	ENSLAFG00000009691	I	0.000
LCORL	Meleagris gallopavo	ENSMGAG00000012554	I	0.000
LCORL	Felis catus	ENSFCAG00000029474	I	0.000
LCORL	Myotis lucifugus	ENSMLUG00000013781	I	0.000
LCORL	Monodelphis domestica	ENSMODG00000000757	I	0.000
LCORL	Erinaceus europaeus	ENSEEUG00000000419	I	0.000
Lcorl	Mus musculus	ENSMUSG00000015882	I	0.000
LCORL	Equus caballus	ENSECAG00000000648	I	0.000
LCORL	Anolis carolinensis	ENSACAG00000002012	I	0.000
LCORL	Oryctolagus cuniculus	ENSOCUG00000006802	I	0.000
LCORL	Otolemur garnettii	ENSOGAG00000005593	I	0.000
LCORL	Pan troglodytes	ENSPTRG00000015943	I	0.000
Myotis_brandtii_LCORL_10024397	Myotis brandtii	Myotis_brandtii_LCORL_10024397	I	0.000
Ogr00836	Ophisaurus gracilis	Ogr00836	I	0.000
Pvit_18026	Pogona vitticeps	Pvit_18026	I	0.000
Tal_R001804	Tyto alba	Tal_R001804	I	0.000

BGIOSGA000456 (Oryza indica) AT hook

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1072 Related TFs

BGIOSGA000456 **(Oryza indica)
AT hook**