CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

fgenesh1_pg.C_scaffold_4000555 *(Phanerochaete chrysosporium)* AT hook
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF02178 (AT_hook)	IPR017956	fgenesh1_pg.C_scaffold_4000555	T017957_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HMGA M01671_2.00	Arabidopsis thaliana	NNNNDWAWH	DWTWHNNNN	PBM Weirauch et al.(2014) pTH7395	0.991	0.520
HMG-I Y M02652_2.00	Pisum sativum	NDWVAAANRVMRWMAY	RTKWYKBYNTTTBWHN	SELEX Mathelier et al.(2014) MA0045.1	0.991	0.500
NCU01145 M01693_2.00	Neurospora crassa	RWATAWWTNN	NNAWWTATWY	PBM Weirauch et al.(2014) pTH8916	0.991	0.452
NCU05635 M01694_2.00	Neurospora crassa	NNNWWWWNNN	NNNWWWWNNN	PBM Weirauch et al.(2014) pTH8863	0.991	0.440
FGRRES_05233 M01104_2.00	Fusarium graminearum	NNNDWWAWWH	DWWTWWHNNN	PBM Lambert et al.(2019) pTH11377	0.991	0.420
athp-3 M01691_2.00	Caenorhabditis elegans	NNDDWDH	DHWHHNN	PBM Weirauch et al.(2014) pTH9097	0.991	0.419
ANIA_01690 M01675_2.00	Aspergillus nidulans	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH8216	0.991	0.400
HMGA1 M09769_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_01	0.991	0.380
HMGA1 M09770_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_Q4	0.991	0.380
Hmga2 M00751_2.00	Mus musculus	NNNNRHWWNN	NNWWDYNNNN	PBM Weirauch et al.(2013) pTH3046	0.991	0.360
ENSPPYG00000004736 M01685_2.00	Pongo abelii	NNNNDWWW	WWWHNNNN	PBM Weirauch et al.(2014) pTH9279	0.991	0.360
HMGA2 M09771_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGA2_01	0.991	0.360
FGRRES_17512 M01105_2.00	Fusarium graminearum	NNNDNWWWW	WWWWNHNNN	PBM Lambert et al.(2019) pTH11412	0.991	0.320
TVAG_474020 M01106_2.00	Trichomonas vaginalis	DNWWWAWW	WWTWWWNH	PBM Lambert et al.(2019) pTH11493	0.991	0.320
BRADI3G55950 M01673_2.00	Brachypodium distachyon	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH9369	0.991	0.300
OS02G0824300 M01688_2.00	Oryza sativa	NNDWAWWN	NWWTWHNN	PBM Weirauch et al.(2014) pTH8406	0.991	0.300
VIT_08s0007g04020 M01689_2.00	Vitis vinifera	DBNDDDDDDN	NHHHHHHNVH	PBM Weirauch et al.(2014) pTH9295	0.991	0.300
hmg-12 M01690_2.00	Caenorhabditis elegans	NNAWWTAWWTNN	NNAWWTAWWTNN	PBM Weirauch et al.(2014) pTH8997	0.991	0.284
AHL13 M01672_2.00	Arabidopsis thaliana	NAWWTAWWWN	NWWWTAWWTN	PBM Weirauch et al.(2014) pTH8202	0.991	0.280
SUM1 M00008_2.00	Saccharomyces cerevisiae	NNDWWWH	DWWWHNN	PBM Badis et al.(2008) SUM1_2124	0.991	0.280
Q7DLU9_PEA M09772_2.00	Pisum sativum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$HMGIY_01	0.991	0.260
SUM1 M07439_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0398.1	0.991	0.240
SUM1 M08478_2.00	Saccharomyces cerevisiae	RYGWCASWAAW	WTTWSTGWCRY	Misc DeBoer et al.(2011) YDR310C_383	0.991	0.240
SUM1 M08479_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	Misc DeBoer et al.(2011) YDR310C_478	0.991	0.240
BRADI5G22430 M01674_2.00	Brachypodium distachyon	VNRDDDHDD	HHDHHHYNB	PBM Weirauch et al.(2014) pTH9242	0.991	0.180
phf21ab M01678_2.00	Danio rerio	NNNDNADW	WHTNHNNN	PBM Weirauch et al.(2014) pTH9254	0.991	0.180
PK26376.1 M01108_2.00	Cannabis sativa	DDWWWAWW	WWTWWWHH	PBM Lambert et al.(2019) pTH11261	0.991	0.180
ATEG_07399 M01676_2.00	Aspergillus terreus	DHNNHNDWWW	WWWHNDNNDH	PBM Weirauch et al.(2014) pTH9237	0.991	0.160
ENSACAG00000014978 M01677_2.00	Anolis carolinensis	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9222	0.991	0.160
kmt2cb M01679_2.00	Danio rerio	WWAWAWAT	ATWTWTWW	PBM Weirauch et al.(2014) pTH7876	0.991	0.160
phf21ab M01680_2.00	Gasterosteus aculeatus	AAAAWAAA	TTTWTTTT	PBM Weirauch et al.(2014) pTH9180	0.991	0.160
PHF21A M01681_2.00	Meleagris gallopavo	HDNHNNDNHD	HDNHNNDNHD	PBM Weirauch et al.(2014) pTH7875	0.991	0.160
Setbp1 M01683_2.00	Mus musculus	NDNNNNNNHN	NDNNNNNNHN	PBM Weirauch et al.(2014) pTH1294	0.991	0.160
Ahctf1 M00750_2.00	Mus musculus	AAAWAWAW	ATWTWTTT	PBM Weirauch et al.(2013) pTH2361	0.991	0.160
MTR_4g101990 M01687_2.00	Medicago truncatula	AAAWTAAT	ATTAWTTT	PBM Weirauch et al.(2014) pTH9209	0.991	0.160
PK00377.1 M01107_2.00	Cannabis sativa	DAWWWAWW	WWTWWWTH	PBM Lambert et al.(2019) pTH11338	0.991	0.160
PHF21A M01103_2.00	Monodelphis domestica	NNNAWATWAATN	NATTWATWTNNN	PBM Lambert et al.(2019) pTH9309	0.991	0.140
PHF21A M01682_2.00	Monodelphis domestica	NNNNNHRH	DYDNNNNN	PBM Weirauch et al.(2014) pTH9335	0.991	0.140
Phf21a M01684_2.00	Mus musculus	NNNATATWAATN	NATTWATATNNN	PBM Weirauch et al.(2014) pTH8550	0.991	0.140
Xrp1 M01686_2.00	Drosophila melanogaster	NNNNDWAWW	WWTWHNNNN	PBM Weirauch et al.(2014) pTH9260	0.991	0.140
estExt_fgeneshNG_pg.C_820014 M01692_2.00	Naegleria gruberi	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9380	0.991	0.140
Xrp1 M05900_2.00	Drosophila melanogaster	RTKRYGYAAT	ATTRCRYMAY	B1H Zhu et al.(2011) Xrp1_CG6272_SANGER_5_FBgn0261113	0.991	0.140
SUM1 M01517_2.00	Saccharomyces cerevisiae	NNNDWAWW	WWTWHNNN	PBM Zhu et al.(2009) Sum1	0.991	0.020
For this family, TFs with SR scores > 0.990* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
fgenesh1_pg.C_scaffold_4000555	AT hook	324	336	PRPRGRPRKEGGK
fgenesh1_pg.C_scaffold_4000555	AT hook	384	396	PKKRGRPPKASTA
fgenesh1_pg.C_scaffold_4000555	AT hook	413	425	VKKRGRPRKSPVE
fgenesh1_pg.C_scaffold_4000555	AT hook	503	513	KRGRGRPRKAE

Links
Other AT hook family TFs
Other *Phanerochaete chrysosporium* TFs

1072 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAEL003602	Aedes aegypti	AAEL003602	N	0.000
AALB005765	Anopheles albimanus	AALB005765	N	0.000
AARA007771	Anopheles arabiensis	AARA007771	N	0.000
AATE006171	Anopheles atroparvus	AATE006171	N	0.000
ACHR001790	Anopheles christyi	ACHR001790	N	0.000
ACUA006984	Anopheles culicifacies	ACUA006984	N	0.000
ADIR008055	Anopheles dirus	ADIR008055	N	0.000
AEPI001699	Anopheles epiroticus	AEPI001699	N	0.000
AFAF012484	Anopheles farauti	AFAF012484	N	0.000
AFUN008026	Anopheles funestus	AFUN008026	N	0.000
AGAP007109	Anopheles gambiae	AGAP007109	N	0.000
Alligator_sinensis_CCG009248.1	Alligator sinensis	Alligator_sinensis_CCG009248.1	N	0.000
AMAM024265	Anopheles maculatus	AMAM024265	N	0.000
AMEC009079	Anopheles melas	AMEC009079	N	0.000
AMEC019433	Anopheles melas	AMEC019433	N	0.000
AMEM014597	Anopheles merus	AMEM014597	N	0.000
AMIN011248	Anopheles minimus	AMIN011248	N	0.000
AQUA002036	Anopheles quadriannulatus	AQUA002036	N	0.000
ASIS021384	Anopheles sinensis	ASIS021384	N	0.000
ASTEI06883	Anopheles stephensi	ASTEI06883	N	0.000
BGIBMGA012741	Bombyx mori	BGIBMGA012741	N	0.000
CapteG221467	Capitella teleta	CapteG221467	N	0.000
CPIJ004963	Culex quinquefasciatus	CPIJ004963	N	0.000
CpipJ_CPIJ004963	Culex pipiens	CpipJ_CPIJ004963	N	0.000
ENSAMXG00000020060	Astyanax mexicanus	ENSAMXG00000020060	N	0.000
ENSCSAG00000004478	Chlorocebus sabaeus	ENSCSAG00000004478	N	0.000
ENSECAG00000017767	Equus caballus	ENSECAG00000017767	N	0.000
ENSFCAG00000026794	Felis catus	ENSFCAG00000026794	N	0.000
ENSGALG00000026560	Gallus gallus	ENSGALG00000026560	N	0.000
ENSGMOG00000016370	Gadus morhua	ENSGMOG00000016370	N	0.000
ENSLACG00000001866	Latimeria chalumnae	ENSLACG00000001866	N	0.000
ENSLOCG00000007226	Lepisosteus oculatus	ENSLOCG00000007226	N	0.000
ENSMEUG00000015872	Macropus eugenii	ENSMEUG00000015872	N	0.000
ENSMPUG00000006558	Mustela putorius furo	ENSMPUG00000006558	N	0.000
ENSNLEG00000008504	Nomascus leucogenys	ENSNLEG00000008504	N	0.000
ENSOARG00000018972	Ovis aries	ENSOARG00000018972	N	0.000
ENSOGAG00000026262	Otolemur garnettii	ENSOGAG00000026262	N	0.000
ENSONIG00000014038	Oreochromis niloticus	ENSONIG00000014038	N	0.000
ENSP00000406998	Macaca fascicularis	ENSP00000406998	N	0.000
ENSPANG00000024349	Papio anubis	ENSPANG00000024349	N	0.000
ENSPFOG00000011716	Poecilia formosa	ENSPFOG00000011716	N	0.000
ENSPMAG00000005756	Petromyzon marinus	ENSPMAG00000005756	N	0.000
ENSSHAG00000018147	Sarcophilus harrisii	ENSSHAG00000018147	N	0.000
ENSSTOG00000015688	Ictidomys tridecemlineatus	ENSSTOG00000015688	N	0.000
ENSXMAG00000009993	Xiphophorus maculatus	ENSXMAG00000009993	N	0.000
fgenesh2_pg.scaffold_282000018	Branchiostoma floridae	fgenesh2_pg.scaffold_282000018	N	0.000
HMEL017852	Heliconius melpomene	HMEL017852	N	0.000
ISCW009928	Ixodes scapularis	ISCW009928	N	0.000
KGM_11907	Danaus plexippus	KGM_11907	N	0.000
L798_05037	Zootermopsis nevadensis	L798_05037	N	0.000
LCUP008185	Lucilia cuprina	LCUP008185	N	0.000
LDEC001191	Leptinotarsa decemlineata	LDEC001191	N	0.000
LotgiG69958	Lottia gigantea	LotgiG69958	N	0.000
MCINX010301	Melitaea cinxia	MCINX010301	N	0.000
MDOA007546	Musca domestica	MDOA007546	N	0.000
Ocbimv22006527m.g	Octopus bimaculoides	Ocbimv22006527m.g	N	0.000
Ogr08710	Ophisaurus gracilis	Ogr08710	N	0.000
PHUM271650	Pediculus humanus	PHUM271650	N	0.000
PPAI006396	Phlebotomus papatasi	PPAI006396	N	0.000
PRDM8	Tupaia belangeri	ENSTBEG00000006138	N	0.000
PRDM8	Myotis lucifugus	ENSMLUG00000030190	N	0.000
PRDM8	Macaca mulatta	ENSMMUG00000003338	N	0.000
PRDM8	Monodelphis domestica	ENSMODG00000020789	N	0.000
Prdm8	Mus musculus	ENSMUSG00000035456	N	0.000
PRDM8	Gorilla gorilla	ENSGGOG00000007501	N	0.000
PRDM8	Procavia capensis	ENSPCAG00000001081	N	0.000
Prdm8	Rattus norvegicus	ENSRNOG00000002004	N	0.000
PRDM8	Sorex araneus	ENSSARG00000009823	N	0.000
PRDM8	Homo sapiens	ENSG00000152784	N	0.000
PRDM8	Dasypus novemcinctus	ENSDNOG00000011667	N	0.000
prdm8	Xenopus tropicalis	XB-GENE-984391	N	0.000
PRDM8	Cavia porcellus	ENSCPOG00000019738	N	0.000
PRDM8	Callithrix jacchus	ENSCJAG00000015064	N	0.000
PRDM8	Canis familiaris	ENSCAFG00000008881	N	0.000
PRDM8	Anolis carolinensis	ENSACAG00000010106	N	0.000
prdm8b	Oryzias latipes	ENSORLG00000017786	N	0.000
prdm8b	Danio rerio	ENSDARG00000054683	N	0.000
prdm8b	Tetraodon nigroviridis	ENSTNIG00000016712	N	0.000
prdm8b	Takifugu rubripes	ENSTRUG00000001003	N	0.000
Pvit_15291	Pogona vitticeps	Pvit_15291	N	0.000
Sakowv30017448m.g	Saccoglossus kowalevskii	Sakowv30017448m.g	N	0.000
SMAR006435	Strigamia maritima	SMAR006435	N	0.000
SMU15028407	Schmidtea mediterranea	SMU15028407	N	0.000
TC013073	Tribolium castaneum	TC013073	N	0.000
tetur11g03890	Tetranychus urticae	tetur11g03890	N	0.000

fgenesh1_pg.C_scaffold_4000555 (Phanerochaete chrysosporium) AT hook

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1072 Related TFs

fgenesh1_pg.C_scaffold_4000555 **(Phanerochaete chrysosporium)
AT hook**