VRN1 (Arabidopsis lyrata)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 fgenesh2_kg.3__2116__AT3G18990.1 T019208_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		1.000 1.000
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__2116__AT3G18990.1 B3 5 98
fgenesh2_kg.3__2116__AT3G18990.1 B3 244 338

Links

Other B3 family TFs
Other Arabidopsis lyrata TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SPAL_0000105000 Strongyloides papillosus SPAL_0000105000 N 0.000
SPAL_0000389700 Strongyloides papillosus SPAL_0000389700 N 0.000
SPAL_0001181200 Strongyloides papillosus SPAL_0001181200 N 0.000
SSTP_0000321400 Strongyloides stercoralis SSTP_0000321400 N 0.000
SVE_0326500 Strongyloides venezuelensis SVE_0326500 N 0.000
SVE_0326600 Strongyloides venezuelensis SVE_0326600 N 0.000
SVE_1158300 Strongyloides venezuelensis SVE_1158300 N 0.000