CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Eucgr.C02178
(
Eucalyptus grandis
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02362 (B3)
IPR003340
Eucgr.C02178
T023004_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARF8
M01697_2.00
Arabidopsis thaliana
NHTGTCGGN
NCCGACADN
PBM
Weirauch et al.(2014)
pTH8661
0.806
0.806
ARF5
M06701_2.00
Arabidopsis thaliana
WYTTGTCGGN
NCCGACAARW
Dap-seq
OMalley et al.(2016)
MP_col
0.776
0.776
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Eucgr.C02178.1
B3
137
239
FCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDTMWNFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDDKQQLLLGIRRAN
Eucgr.C02178.2
B3
71
173
FCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELMARDLHDTMWNFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDDKQQLLLGIRRAN
Links
Other
B3
family TFs
Other
Eucalyptus grandis
TFs
510 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
EVEC_0000095301
Enterobius vermicularis
EVEC_0000095301
N
0.000
scaffold157-EXSNAP2012.14
Pristionchus exspectatus
scaffold157-EXSNAP2012.14
N
0.000
scaffold498-EXSNAP2012.10
Pristionchus exspectatus
scaffold498-EXSNAP2012.10
N
0.000
SMUV_0000151901
Syphacia muris
SMUV_0000151901
N
0.000
WUBG_18193
Wuchereria bancrofti
WUBG_18193
N
0.000