CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Gorai.003G073600
(
Gossypium raimondii
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02362 (B3)
IPR003340
Gorai.003G073600
T023315_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAV1
M01646_2.00
Arabidopsis thaliana
NCACCTGAHN
NDTCAGGTGN
PBM
Weirauch et al.(2014)
pTH8592
0.713
0.713
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.003G073600.1
B3
101
206
FDKVVTPSDVGKLNRLVIPKQHAEKHFPLDSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGVGELGKHRLFIDWRRRP
Links
Other
B3
family TFs
Other
Gossypium raimondii
TFs
289 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ASIM_0001057401
Anisakis simplex
ASIM_0001057401
N
ASU_11875
Ascaris suum
ASU_11875
N
D918_02747
Trichuris suis
D918_02747
N
DME_0000059301
Dracunculus medinensis
DME_0000059301
N
EVEC_0000194801
Enterobius vermicularis
EVEC_0000194801
N
L893_g21958
Steinernema glaseri
L893_g21958
N
PTRK_0000987600
Parastrongyloides trichosuri
PTRK_0000987600
N
RSKR_0000468300
Rhabditophanes kr3021
RSKR_0000468300
N
RSKR_0000933225
Rhabditophanes kr3021
RSKR_0000933225
N
SMUV_0000052701
Syphacia muris
SMUV_0000052701
N
SPAL_0000212800
Strongyloides papillosus
SPAL_0000212800
N
SSTP_0000048500
Strongyloides stercoralis
SSTP_0000048500
N
TMUE_s0149000100
Trichuris muris
TMUE_s0149000100
N
TTRE_0000739201
Trichuris trichiura
TTRE_0000739201
N