BPC1 (Arabidopsis lyrata)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 fgenesh2_kg.5__107__AT2G01930.1 T024603_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC1
M06715_2.00 		Arabidopsis thaliana
GAGAGAGAGAGAGAGAGAGAGAGA
TCTCTCTCTCTCTCTCTCTCTCTC		 Dap-seq
OMalley et al.(2016)
BPC1_col_a 		0.831 0.831
BPC1
M06716_2.00 		Arabidopsis thaliana
RAGAGAGAGARAGAR
YTCTYTCTCTCTCTY		 Dap-seq
OMalley et al.(2016)
BPC1_colamp_a 		0.831 0.831
BPC1
M09775_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BPC1_Q2 		0.831 0.831
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.5__107__AT2G01930.1 BBR 1 280

Links

Other BBR family TFs
Other Arabidopsis lyrata TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GUITHDRAFT_100592 Guillardia theta GUITHDRAFT_100592 N 0.000
GUITHDRAFT_100831 Guillardia theta GUITHDRAFT_100831 N 0.000
GUITHDRAFT_105607 Guillardia theta GUITHDRAFT_105607 N 0.000
GUITHDRAFT_105608 Guillardia theta GUITHDRAFT_105608 N 0.000
GUITHDRAFT_105609 Guillardia theta GUITHDRAFT_105609 N 0.000
GUITHDRAFT_107827 Guillardia theta GUITHDRAFT_107827 N 0.000
GUITHDRAFT_107828 Guillardia theta GUITHDRAFT_107828 N 0.000
GUITHDRAFT_107834 Guillardia theta GUITHDRAFT_107834 N 0.000
GUITHDRAFT_107835 Guillardia theta GUITHDRAFT_107835 N 0.000
GUITHDRAFT_107836 Guillardia theta GUITHDRAFT_107836 N 0.000
GUITHDRAFT_110980 Guillardia theta GUITHDRAFT_110980 N 0.000
GUITHDRAFT_113584 Guillardia theta GUITHDRAFT_113584 N 0.000
GUITHDRAFT_114314 Guillardia theta GUITHDRAFT_114314 N 0.000
GUITHDRAFT_114315 Guillardia theta GUITHDRAFT_114315 N 0.000
GUITHDRAFT_114316 Guillardia theta GUITHDRAFT_114316 N 0.000
GUITHDRAFT_114990 Guillardia theta GUITHDRAFT_114990 N 0.000
GUITHDRAFT_116128 Guillardia theta GUITHDRAFT_116128 N 0.000
GUITHDRAFT_116156 Guillardia theta GUITHDRAFT_116156 N 0.000
GUITHDRAFT_116484 Guillardia theta GUITHDRAFT_116484 N 0.000
GUITHDRAFT_120951 Guillardia theta GUITHDRAFT_120951 N 0.000
GUITHDRAFT_122902 Guillardia theta GUITHDRAFT_122902 N 0.000
GUITHDRAFT_122904 Guillardia theta GUITHDRAFT_122904 N 0.000
GUITHDRAFT_152419 Guillardia theta GUITHDRAFT_152419 N 0.000
GUITHDRAFT_153078 Guillardia theta GUITHDRAFT_153078 N 0.000
GUITHDRAFT_154577 Guillardia theta GUITHDRAFT_154577 N 0.000
GUITHDRAFT_154579 Guillardia theta GUITHDRAFT_154579 N 0.000
GUITHDRAFT_155567 Guillardia theta GUITHDRAFT_155567 N 0.000
GUITHDRAFT_156158 Guillardia theta GUITHDRAFT_156158 N 0.000
GUITHDRAFT_156159 Guillardia theta GUITHDRAFT_156159 N 0.000