XM_002335238.1 (Populus trichocarpa)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 POPTR_0019s02110 T027397_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0019s02110.1 BED ZF 102 151

Links

Other BED ZF family TFs
Other Populus trichocarpa TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29805.m001497 Ricinus communis 29805.m001497 I 0.000
30169.m006616 Ricinus communis 30169.m006616 I 0.000
Al_scaffold_0006_3886 Arabidopsis lyrata Al_scaffold_0006_3886 I 0.000
Al_scaffold_0008_1647 Arabidopsis lyrata Al_scaffold_0008_1647 I 0.000
AMTR_s00001p00261430 Amborella trichopoda AMTR_s00001p00261430 I 0.000
AMTR_s00023p00237480 Amborella trichopoda AMTR_s00023p00237480 I 0.000
AN Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000066 I 0.000
Aquca_013_00181 Aquilegia coerulea Aquca_013_00181 I 0.000
Aquca_027_00135 Aquilegia coerulea Aquca_027_00135 I 0.000
AT1G01520 Arabidopsis thaliana AT1G01520 I 0.000
BGIOSGA005842 Oryza indica BGIOSGA005842 I 0.000
BGIOSGA020708 Oryza indica BGIOSGA020708 I 0.000
Bo1g144410 Brassica oleracea Bo1g144410 I 0.000
Bo3g002070 Brassica oleracea Bo3g002070 I 0.000
Bo3g023120 Brassica oleracea Bo3g023120 I 0.000
Bo5g002430 Brassica oleracea Bo5g002430 I 0.000
Bo5g138190 Brassica oleracea Bo5g138190 I 0.000
Bo9g003580 Brassica oleracea Bo9g003580 I 0.000
Bo9g183320 Brassica oleracea Bo9g183320 I 0.000
Bostr.10064s0009 Boechera stricta Bostr.10064s0009 I 0.000
Bostr.2128s0168 Boechera stricta Bostr.2128s0168 I 0.000
Bostr.22252s0109 Boechera stricta Bostr.22252s0109 I 0.000
Bostr.5325s0070 Boechera stricta Bostr.5325s0070 I 0.000
Bostr.7305s0060 Boechera stricta Bostr.7305s0060 I 0.000
Bra003117 Brassica rapa Bra003117 I 0.000
Bra005751 Brassica rapa Bra005751 I 0.000
Bra009562 Brassica rapa Bra009562 I 0.000
Bra029111 Brassica rapa Bra029111 I 0.000
Bra029778 Brassica rapa Bra029778 I 0.000
Bra033257 Brassica rapa Bra033257 I 0.000
Bra034074 Brassica rapa Bra034074 I 0.000
Bra037365 Brassica rapa Bra037365 I 0.000
BRADI1G32330 Brachypodium distachyon BRADI1G32330 I 0.000
BRADI3G51757 Brachypodium distachyon BRADI3G51757 I 0.000
Cagra.0084s0014 Capsella grandiflora Cagra.0084s0014 I 0.000
Cagra.1968s0093 Capsella grandiflora Cagra.1968s0093 I 0.000
Cagra.2240s0021 Capsella grandiflora Cagra.2240s0021 I 0.000
Cagra.6594s0025 Capsella grandiflora Cagra.6594s0025 I 0.000
Carubv10001399m.g Capsella rubella Carubv10001399m.g I 0.000
Carubv10001591m.g Capsella rubella Carubv10001591m.g I 0.000
Carubv10011679m.g Capsella rubella Carubv10011679m.g I 0.000
Carubv10014328m.g Capsella rubella Carubv10014328m.g I 0.000
Carubv10026677m.g Capsella rubella Carubv10026677m.g I 0.000
cassava12928.valid.m1 Manihot esculenta cassava12928.valid.m1 I 0.000
cassava12929.valid.m1 Manihot esculenta cassava12929.valid.m1 I 0.000
cassava18980.valid.m1 Manihot esculenta cassava18980.valid.m1 I 0.000
cassava18981.valid.m1 Manihot esculenta cassava18981.valid.m1 I 0.000
cassava36811.valid.m1 Manihot esculenta cassava36811.valid.m1 I 0.000
cassava43542.valid.m1 Manihot esculenta cassava43542.valid.m1 I 0.000
cassava43543.valid.m1 Manihot esculenta cassava43543.valid.m1 I 0.000
cassava43544.valid.m1 Manihot esculenta cassava43544.valid.m1 I 0.000
cassava7251.valid.m1 Manihot esculenta cassava7251.valid.m1 I 0.000
Ca_13713 Cicer arietinum Ca_13713 I 0.000
Ca_14048 Cicer arietinum Ca_14048 I 0.000
Ciclev10005411m.g Citrus clementina Ciclev10005411m.g I 0.000
Ciclev10012263m.g Citrus clementina Ciclev10012263m.g I 0.000
Ciclev10020939m.g Citrus clementina Ciclev10020939m.g I 0.000
Cla005022 Citrullus lanatus Cla005022 I 0.000
Cla018126 Citrullus lanatus Cla018126 I 0.000
Cla021528 Citrullus lanatus Cla021528 I 0.000
Cucsa.108150 Cucumis sativus Cucsa.108150 I 0.000
Cucsa.192960 Cucumis sativus Cucsa.192960 I 0.000
Cucsa.258660 Cucumis sativus Cucsa.258660 I 0.000
Cucsa.307250 Cucumis sativus Cucsa.307250 I 0.000
EFA77680.1 Polysphondylium pallidum EFA77680.1 I 0.000
estExt_fgeneshNG_pg.C_380110 Naegleria gruberi estExt_fgeneshNG_pg.C_380110 I 0.000
estExt_Genewise1.C_5980003 Dictyostelium purpureum estExt_Genewise1.C_5980003 I 0.000
Eucgr.A01184 Eucalyptus grandis Eucgr.A01184 I 0.000
Eucgr.A02733 Eucalyptus grandis Eucgr.A02733 I 0.000
Eucgr.D02320 Eucalyptus grandis Eucgr.D02320 I 0.000
evm.TU.supercontig_114.57 Carica papaya evm.TU.supercontig_114.57 I 0.000
evm.TU.supercontig_184.27 Carica papaya evm.TU.supercontig_184.27 I 0.000
F775_09103 Aegilops tauschii F775_09103 I 0.000
F775_30481 Aegilops tauschii F775_30481 I 0.000
fgenesh1_pg.scaffold_160000002 Physcomitrella patens fgenesh1_pg.scaffold_160000002 I 0.000
fgenesh1_pg.scaffold_198000070 Physcomitrella patens fgenesh1_pg.scaffold_198000070 I 0.000
fgenesh2_kg.3__982__AT3G09600.1 Arabidopsis lyrata fgenesh2_kg.3__982__AT3G09600.1 I 0.000
gene13188-v1.0-hybrid Fragaria vesca gene13188-v1.0-hybrid I 0.000
gene18104-v1.0-hybrid Fragaria vesca gene18104-v1.0-hybrid I 0.000
gene19228-v1.0-hybrid Fragaria vesca gene19228-v1.0-hybrid I 0.000
GLYMA03G33440 Glycine max GLYMA03G33440 I 0.000
GLYMA07G07200 Glycine max GLYMA07G07200 I 0.000
GLYMA09G24400 Glycine max GLYMA09G24400 I 0.000
GLYMA10G05560 Glycine max GLYMA10G05560 I 0.000
GLYMA10G37520 Glycine max GLYMA10G37520 I 0.000
GLYMA13G19910 Glycine max GLYMA13G19910 I 0.000
GLYMA16G03640 Glycine max GLYMA16G03640 I 0.000
GLYMA16G29740 Glycine max GLYMA16G29740 I 0.000
GLYMA18G47230 Glycine max GLYMA18G47230 I 0.000
GLYMA19G36170 Glycine max GLYMA19G36170 I 0.000
GLYMA20G30250 Glycine max GLYMA20G30250 I 0.000
Gorai.004G159700 Gossypium raimondii Gorai.004G159700 I 0.000
Gorai.006G178000 Gossypium raimondii Gorai.006G178000 I 0.000
Gorai.007G013200 Gossypium raimondii Gorai.007G013200 I 0.000
Gorai.007G102900 Gossypium raimondii Gorai.007G102900 I 0.000
Gorai.008G274500 Gossypium raimondii Gorai.008G274500 I 0.000
GRMZM2G057408 Zea mays GRMZM2G057408 I 0.000
GRMZM2G118693 Zea mays GRMZM2G118693 I 0.000
GRMZM2G135052 Zea mays GRMZM2G135052 I 0.000
GRMZM2G170148 Zea mays GRMZM2G170148 I 0.000
GRMZM5G833032 Zea mays GRMZM5G833032 I 0.000
GSMUA_Achr1G03720_001 Musa acuminata GSMUA_Achr1G03720_001 I 0.000
GSMUA_Achr1G06480_001 Musa acuminata GSMUA_Achr1G06480_001 I 0.000
GSMUA_Achr5G10280_001 Musa acuminata GSMUA_Achr5G10280_001 I 0.000
GSMUA_Achr7G04620_001 Musa acuminata GSMUA_Achr7G04620_001 I 0.000
GSMUA_Achr7G17560_001 Musa acuminata GSMUA_Achr7G17560_001 I 0.000
gw1.46.107.1 Physcomitrella patens gw1.46.107.1 I 0.000
LCL1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000163 I 0.000
LjT02J13.100.nc Lotus japonicus LjT02J13.100.nc I 0.000
LPERR02G22740 Leersia perrieri LPERR02G22740 I 0.000
LPERR06G20160 Leersia perrieri LPERR06G20160 I 0.000
Lus10007914.g Linum usitatissimum Lus10007914.g I 0.000
Lus10014015.g Linum usitatissimum Lus10014015.g I 0.000
Lus10019902.g Linum usitatissimum Lus10019902.g I 0.000
Lus10027521.g Linum usitatissimum Lus10027521.g I 0.000
Lus10036392.g Linum usitatissimum Lus10036392.g I 0.000
Lus10038846.g Linum usitatissimum Lus10038846.g I 0.000
Lus10039284.g Linum usitatissimum Lus10039284.g I 0.000
MDP0000140220 Malus domestica MDP0000140220 I 0.000
MDP0000186860 Malus domestica MDP0000186860 I 0.000
MDP0000254258 Malus domestica MDP0000254258 I 0.000
MDP0000282906 Malus domestica MDP0000282906 I 0.000
MDP0000298778 Malus domestica MDP0000298778 I 0.000
MDP0000325672 Malus domestica MDP0000325672 I 0.000
mgf012072m Mimulus guttatus mgf012072m I 0.000
mgf015175m Mimulus guttatus mgf015175m I 0.000
mgf018328m Mimulus guttatus mgf018328m I 0.000
MLOC_5597 Hordeum vulgare MLOC_5597 I 0.000
MLOC_56804 Hordeum vulgare MLOC_56804 I 0.000
MLOC_68189 Hordeum vulgare MLOC_68189 I 0.000
MTR_0123s0070 Medicago truncatula MTR_0123s0070 I 0.000
MTR_1g067000 Medicago truncatula MTR_1g067000 I 0.000
MTR_8g028655 Medicago truncatula MTR_8g028655 I 0.000
mybG Dictyostelium discoideum DDB_G0288783 D 0.000
OB02G35240 Oryza brachyantha OB02G35240 I 0.000
OB06G10430 Oryza brachyantha OB06G10430 I 0.000
OB06G32000 Oryza brachyantha OB06G32000 I 0.000
OBART02G27940 Oryza barthii OBART02G27940 I 0.000
OBART06G24250 Oryza barthii OBART06G24250 I 0.000
OGLUM02G28500 Oryza glumaepatula OGLUM02G28500 I 0.000
OGLUM06G25500 Oryza glumaepatula OGLUM06G25500 I 0.000
OMERI02G27110 Oryza meridionalis OMERI02G27110 I 0.000
OMERI06G24490 Oryza meridionalis OMERI06G24490 I 0.000
ONIVA02G31050 Oryza nivara ONIVA02G31050 I 0.000
ONIVA06G30670 Oryza nivara ONIVA06G30670 I 0.000
OPUNC02G25660 Oryza punctata OPUNC02G25660 I 0.000
OPUNC06G21970 Oryza punctata OPUNC06G21970 I 0.000
orange1.1g019104m.g Citrus sinensis orange1.1g019104m.g I 0.000
orange1.1g020389m.g Citrus sinensis orange1.1g020389m.g I 0.000
orange1.1g040811m.g Citrus sinensis orange1.1g040811m.g I 0.000
ORGLA02G0240100 Oryza glaberrima ORGLA02G0240100 I 0.000
ORGLA06G0003400 Oryza glaberrima ORGLA06G0003400 I 0.000
ORGLA06G0204000 Oryza glaberrima ORGLA06G0204000 I 0.000
ORUFI02G29430 Oryza rufipogon ORUFI02G29430 I 0.000
ORUFI06G26070 Oryza rufipogon ORUFI06G26070 I 0.000
OS02G0680700 Oryza sativa OS02G0680700 I 0.000
OS06G0105800 Oryza sativa OS06G0105800 I 0.000
Pavir.Aa00937 Panicum virgatum Pavir.Aa00937 I 0.000
Pavir.Ca00604 Panicum virgatum Pavir.Ca00604 I 0.000
Pavir.Da00204 Panicum virgatum Pavir.Da00204 I 0.000
Pavir.Db00388 Panicum virgatum Pavir.Db00388 I 0.000
PGSC0003DMG400000189 Solanum tuberosum PGSC0003DMG400000189 I 0.000
PGSC0003DMG400011048 Solanum tuberosum PGSC0003DMG400011048 I 0.000
PGSC0003DMG400028896 Solanum tuberosum PGSC0003DMG400028896 I 0.000
PK02532.1 Cannabis sativa PK02532.1 D 0.000
PK06515.1 Cannabis sativa PK06515.1 I 0.000
Pm002840 Prunus mume Pm002840 I 0.000
Pm018226 Prunus mume Pm018226 I 0.000
Pm019843 Prunus mume Pm019843 I 0.000
POPTR_0002s16460 Populus trichocarpa POPTR_0002s16460 I 0.000
POPTR_0004s07160 Populus trichocarpa POPTR_0004s07160 I 0.000
POPTR_0006s13530 Populus trichocarpa POPTR_0006s13530 I 0.000
POPTR_0014s08520 Populus trichocarpa POPTR_0014s08520 I 0.000
POPTR_0016s08470 Populus trichocarpa POPTR_0016s08470 I 0.000
POPTR_0017s01140 Populus trichocarpa POPTR_0017s01140 I 0.000
PRUPE_ppa008029mg Prunus persica PRUPE_ppa008029mg I 0.000
PRUPE_ppa008749mg Prunus persica PRUPE_ppa008749mg I 0.000
PRUPE_ppa011002mg Prunus persica PRUPE_ppa011002mg I 0.000
RVE4 Arabidopsis thaliana AT5G02840 D 0.000
RVE5 Arabidopsis thaliana AT4G01280 D 0.000
RVE6 Arabidopsis thaliana AT5G52660 D 0.000
RVE8 Arabidopsis thaliana AT3G09600 D 0.000
SapurV1A.0013s1130 Salix purpurea SapurV1A.0013s1130 I 0.000
SapurV1A.0099s0370 Salix purpurea SapurV1A.0099s0370 I 0.000
SapurV1A.0247s0220 Salix purpurea SapurV1A.0247s0220 I 0.000
SapurV1A.0804s0060 Salix purpurea SapurV1A.0804s0060 I 0.000
SapurV1A.0985s0080 Salix purpurea SapurV1A.0985s0080 I 0.000
SapurV1A.1218s0100 Salix purpurea SapurV1A.1218s0100 I 0.000
Sb04g031820 Sorghum bicolor Sb04g031820 I 0.000
Sb10g000590 Sorghum bicolor Sb10g000590 I 0.000
SELMODRAFT_137893 Selaginella moellendorffii SELMODRAFT_137893 I 0.000
SELMODRAFT_19077 Selaginella moellendorffii SELMODRAFT_19077 I 0.000
SELMODRAFT_72682 Selaginella moellendorffii SELMODRAFT_72682 I 0.000
SELMODRAFT_78045 Selaginella moellendorffii SELMODRAFT_78045 I 0.000
Si006824m.g Setaria italica Si006824m.g I 0.000
Si006883m.g Setaria italica Si006883m.g I 0.000
Si017977m.g Setaria italica Si017977m.g I 0.000
Solyc01g095030.2 Solanum lycopersicum Solyc01g095030.2 I 0.000
Solyc06g036300.2 Solanum lycopersicum Solyc06g036300.2 I 0.000
Solyc10g084370.1 Solanum lycopersicum Solyc10g084370.1 I 0.000
TCM_005269 Theobroma cacao TCM_005269 I 0.000
TCM_015255 Theobroma cacao TCM_015255 I 0.000
TCM_022074 Theobroma cacao TCM_022074 I 0.000
Thhalv10008382m.g Eutrema salsugineum Thhalv10008382m.g I 0.000
Thhalv10014025m.g Eutrema salsugineum Thhalv10014025m.g I 0.000
Thhalv10014069m.g Eutrema salsugineum Thhalv10014069m.g I 0.000
Thhalv10021220m.g Eutrema salsugineum Thhalv10021220m.g I 0.000
Thhalv10028806m.g Eutrema salsugineum Thhalv10028806m.g I 0.000
Traes_4AL_D00AB8CFA Triticum aestivum Traes_4AL_D00AB8CFA I 0.000
Traes_6AL_362F82EAD Triticum aestivum Traes_6AL_362F82EAD I 0.000
Traes_6DL_30F715B53 Triticum aestivum Traes_6DL_30F715B53 I 0.000
Traes_7DL_AB55D9F4E Triticum aestivum Traes_7DL_AB55D9F4E I 0.000
TRIUR3_10644 Triticum urartu TRIUR3_10644 I 0.000
VIT_08s0040g03220 Vitis vinifera VIT_08s0040g03220 I 0.000
VIT_15s0046g02260 Vitis vinifera VIT_15s0046g02260 I 0.000
VIT_16s0050g01180 Vitis vinifera VIT_16s0050g01180 I 0.000