Pavir.J21810 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.J21810 T028602_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J21810.1.p BED ZF 29 77
Pavir.J21810.2.p BED ZF 29 77

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R004205 Calypte anna Aan_R004205 N
Cmyd_10002198 Chelonia mydas Cmyd_10002198 N
ENSAMXG00000000740 Astyanax mexicanus ENSAMXG00000000740 N
ENSBTAP00000019570-D1 Bos grunniens ENSBTAP00000019570-D1 N
ENSCPOG00000024816 Cavia porcellus ENSCPOG00000024816 N
ENSFALG00000011825 Ficedula albicollis ENSFALG00000011825 N
ENSGMOG00000012454 Gadus morhua ENSGMOG00000012454 N
ENSLACG00000001871 Latimeria chalumnae ENSLACG00000001871 N
ENSLOCG00000013768 Lepisosteus oculatus ENSLOCG00000013768 N
ENSMPUG00000011138 Mustela putorius furo ENSMPUG00000011138 N
ENSOARG00000007647 Ovis aries ENSOARG00000007647 N
ENSONIG00000017593 Oreochromis niloticus ENSONIG00000017593 N
ENSPFOG00000002530 Poecilia formosa ENSPFOG00000002530 N
ENSSHAG00000004636 Sarcophilus harrisii ENSSHAG00000004636 N
ENSSTOG00000009054 Ictidomys tridecemlineatus ENSSTOG00000009054 N
ENSXMAG00000005631 Xiphophorus maculatus ENSXMAG00000005631 N
HELT Homo sapiens ENSG00000187821 N
HELT Bos taurus ENSBTAG00000014704 N
HELT Canis familiaris ENSCAFG00000007599 N
HELT Callithrix jacchus ENSCJAG00000005863 N
helt Takifugu rubripes ENSTRUG00000017593 N
helt Tetraodon nigroviridis ENSTNIG00000018055 N
HELT Taeniopygia guttata ENSTGUG00000006754 N
Helt Rattus norvegicus ENSRNOG00000010785 N
HELT Pan troglodytes ENSPTRG00000016645 N
Helt Mus musculus ENSMUSG00000047171 N
HELT Anolis carolinensis ENSACAG00000002389 N
HELT Monodelphis domestica ENSMODG00000004628 N
HELT Myotis lucifugus ENSMLUG00000004406 N
helt Danio rerio ENSDARG00000056400 N
HELT Loxodonta africana ENSLAFG00000017721 N
HELT Dasypus novemcinctus ENSDNOG00000011225 N
HELT Equus caballus ENSECAG00000008629 N
helt Gasterosteus aculeatus ENSGACG00000017707 N
HELT Felis catus ENSFCAG00000025140 N
Ogr17354 Ophisaurus gracilis Ogr17354 N
Pvit_12333 Pogona vitticeps Pvit_12333 N
XP_002934312 Xenopus tropicalis XP_002934312 N