CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GPUH_0002265101
(
Gongylonema pulchrum
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
GPUH_0002265101
T029354_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GPUH_0002265101-mRNA-1
BED ZF
61
102
HPCWDLVQRIYEHNCMICRICSRVIKCINTRNAMQHFRSCHY
GPUH_0002265101-mRNA-1
BED ZF
151
191
HPSWRYFCRINRRSSNCRLCGAHVAYACSGNLMKHLKSRHI
Links
Other
BED ZF
family TFs
Other
Gongylonema pulchrum
TFs
11 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OBART08G08950
Oryza barthii
OBART08G08950
N
OGLUM08G09520
Oryza glumaepatula
OGLUM08G09520
N
OPUNC08G08370
Oryza punctata
OPUNC08G08370
N
ORUFI08G10150
Oryza rufipogon
ORUFI08G10150
N
OS08G0281500
Oryza sativa
OS08G0281500
N