CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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snap_masked-nMf.1.1.scaf00305-processed-gene-0.12
(
Meloidogyne floridensis
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
snap_masked-nMf.1.1.scaf00305-processed-gene-0.12
T029692_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
snap_masked-nMf.1.1.scaf00305-processed-gene-0.12-mRNA-1
BED ZF
24
61
SPILKHFEEVGDKNVRCKYCSRQMHVVNRNNHLKQFHE
snap_masked-nMf.1.1.scaf00305-processed-gene-0.12-mRNA-1
BED ZF
73
113
QSVLEHFTENVNGKLKCNYCKRKFDSDRLSGLITHLYKIHK
Links
Other
BED ZF
family TFs
Other
Meloidogyne floridensis
TFs
1 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACYPI089349
Acyrthosiphon pisum
ACYPI089349
N
ACYPI32781
Acyrthosiphon pisum
ACYPI32781
N
ACYPI53264
Acyrthosiphon pisum
ACYPI53264
N