Bo3g018990 (Brassica oleracea)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bo3g018990 T031113_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
e_gw1.209.40.1
M01756_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8070 		0.914 0.917
LRL2
M06738_2.00 		Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH69_col_a 		0.914 0.917
SPT
M01709_2.00 		Arabidopsis thaliana
NCACGTGSN
NSCACGTGN		 PBM
Weirauch et al.(2014)
pTH8111 		0.885 0.625
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.872 0.625
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.872 0.625
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.872 0.625
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.872 0.625
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.872 0.625
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.872 0.625
PIF4
M08046_2.00 		Arabidopsis thaliana
CACGTGSV
BSCACGTG		 ChIP-seq
Mathelier et al.(2014)
MA0561.1 		0.858 0.604
PIF5
M08047_2.00 		Arabidopsis thaliana
YCACRTGS
SCAYGTGR		 ChIP-seq
Mathelier et al.(2014)
MA0562.1 		0.845 0.583
PIF5
M09452_2.00 		Arabidopsis thaliana
NNBCAYGTGV
BCACRTGVNN		 Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062 		0.845 0.583
PIF1
M01703_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8733 		0.845 0.646
PIF1
M08404_2.00 		Arabidopsis thaliana
NCACGTGWSNYNHH
DDNRNSWCACGTGN		 ChIP-chip
Mathelier et al.(2014)
MA0552.1 		0.845 0.646
PIF1
M09783_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PIF1_01 		0.845 0.646
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g018990.1 bHLH 97 144

Links

Other bHLH family TFs
Other Brassica oleracea TFs

673 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009070 Calypte anna Aan_R009070 I
Aan_R013218 Calypte anna Aan_R013218 I
ACYPI005432 Acyrthosiphon pisum ACYPI005432 I
Afo_R007963 Aptenodytes forsteri Afo_R007963 I
Alligator_sinensis_CCG007971.1 Alligator sinensis Alligator_sinensis_CCG007971.1 I
Alligator_sinensis_CCG012315.1 Alligator sinensis Alligator_sinensis_CCG012315.1 I
Cmyd_10007930 Chelonia mydas Cmyd_10007930 I
Cmyd_10008393 Chelonia mydas Cmyd_10008393 I
ENSAMEG00000005129 Ailuropoda melanoleuca ENSAMEG00000005129 I
ENSAMEG00000015506 Ailuropoda melanoleuca ENSAMEG00000015506 I
ENSAMXG00000008028 Astyanax mexicanus ENSAMXG00000008028 I
ENSAMXG00000009016 Astyanax mexicanus ENSAMXG00000009016 I
ENSAPLG00000003145 Anas platyrhynchos ENSAPLG00000003145 I
ENSBTAP00000018956-D1 Bos grunniens ENSBTAP00000018956-D1 I
ENSCJAG00000002378 Callithrix jacchus ENSCJAG00000002378 I
ENSCSAG00000005734 Chlorocebus sabaeus ENSCSAG00000005734 I
ENSCSAG00000008412 Chlorocebus sabaeus ENSCSAG00000008412 I
ENSFALG00000011811 Ficedula albicollis ENSFALG00000011811 I
ENSFALG00000013762 Ficedula albicollis ENSFALG00000013762 I
ENSGALG00000011916 Gallus gallus ENSGALG00000011916 I
ENSGMOG00000006325 Gadus morhua ENSGMOG00000006325 I
ENSGMOG00000011626 Gadus morhua ENSGMOG00000011626 I
ENSLACG00000013149 Latimeria chalumnae ENSLACG00000013149 I
ENSLOCG00000008766 Lepisosteus oculatus ENSLOCG00000008766 I
ENSLOCG00000011887 Lepisosteus oculatus ENSLOCG00000011887 I
ENSMEUG00000001306 Macropus eugenii ENSMEUG00000001306 I
ENSMEUG00000011986 Macropus eugenii ENSMEUG00000011986 I
ENSMPUG00000000024 Mustela putorius furo ENSMPUG00000000024 I
ENSMPUG00000016372 Mustela putorius furo ENSMPUG00000016372 I
ENSNLEG00000013625 Nomascus leucogenys ENSNLEG00000013625 I
ENSOARG00000001504 Ovis aries ENSOARG00000001504 I
ENSOARG00000018717 Ovis aries ENSOARG00000018717 I
ENSONIG00000002304 Oreochromis niloticus ENSONIG00000002304 I
ENSONIG00000008375 Oreochromis niloticus ENSONIG00000008375 I
ENSP00000348069 Macaca fascicularis ENSP00000348069 I
ENSP00000354476 Macaca fascicularis ENSP00000354476 I
ENSPANG00000008691 Papio anubis ENSPANG00000008691 I
ENSPANG00000023675 Papio anubis ENSPANG00000023675 I
ENSPFOG00000000475 Poecilia formosa ENSPFOG00000000475 I
ENSPFOG00000010306 Poecilia formosa ENSPFOG00000010306 I
ENSPPYG00000008037 Pongo abelii ENSPPYG00000008037 I
ENSPPYG00000011880 Pongo abelii ENSPPYG00000011880 I
ENSPSIG00000005996 Pelodiscus sinensis ENSPSIG00000005996 I
ENSPSIG00000014746 Pelodiscus sinensis ENSPSIG00000014746 I
ENSSARG00000006597 Sorex araneus ENSSARG00000006597 I
ENSSHAG00000011682 Sarcophilus harrisii ENSSHAG00000011682 I
ENSSHAG00000018607 Sarcophilus harrisii ENSSHAG00000018607 I
ENSSSCG00000023124 Sus scrofa ENSSSCG00000023124 I
ENSSTOG00000012916 Ictidomys tridecemlineatus ENSSTOG00000012916 I
ENSSTOG00000014939 Ictidomys tridecemlineatus ENSSTOG00000014939 I
ENSTGUG00000009772 Taeniopygia guttata ENSTGUG00000009772 I
ENSXMAG00000003080 Xiphophorus maculatus ENSXMAG00000003080 I
ENSXMAG00000014774 Xiphophorus maculatus ENSXMAG00000014774 I
GB54953 Apis mellifera GB54953 I
Gfo_R004756 Geospiza fortis Gfo_R004756 I
Gfo_R006283 Geospiza fortis Gfo_R006283 I
HelroG138368 Helobdella robusta HelroG138368 I
HHAL003331-PA Halyomorpha halys HHAL003331-PA I
HLH106 Drosophila melanogaster FBgn0261283 D
HMEL008680 Heliconius melpomene HMEL008680 I
Hsal_02671--XP_396866.3_APIME Harpegnathos saltator Hsal_02671--XP_396866.3_APIME I
KGM_21476 Danaus plexippus KGM_21476 I
L596_g18997 Steinernema carpocapsae L596_g18997 I
L798_14382 Zootermopsis nevadensis L798_14382 I
L889_g16826 Steinernema feltiae L889_g16826 I
L892_g28061 Steinernema scapterisci L892_g28061 I
L893_g8503 Steinernema glaseri L893_g8503 I
L898_g465 Steinernema monticolum L898_g465 I
LCUP004742 Lucilia cuprina LCUP004742 I
LotgiG224211 Lottia gigantea LotgiG224211 I
MDOA000648 Musca domestica MDOA000648 I
Myotis_brandtii_SREBF1_10023215 Myotis brandtii Myotis_brandtii_SREBF1_10023215 I
Myotis_brandtii_SREBF2_10014539 Myotis brandtii Myotis_brandtii_SREBF2_10014539 I
NV10553 Nasonia vitripennis NV10553 I
Ogr11708 Ophisaurus gracilis Ogr11708 I
Ogr14454 Ophisaurus gracilis Ogr14454 I
Pvit_05020 Pogona vitticeps Pvit_05020 I
Pvit_18605 Pogona vitticeps Pvit_18605 I
RPRC014734 Rhodnius prolixus RPRC014734 I
Sakowv30028178m.g Saccoglossus kowalevskii Sakowv30028178m.g I
SINV16629 Solenopsis invicta SINV16629 I
SMAR011485 Strigamia maritima SMAR011485 I
SREBF1 Bos taurus ENSBTAG00000007884 I
SREBF1 Canis familiaris ENSCAFG00000018436 I
SREBF1 Callithrix jacchus ENSCJAG00000008953 I
SREBF1 Cavia porcellus ENSCPOG00000002439 I
srebf1 Danio rerio ENSDARG00000067607 I
Srebf1 Dipodomys ordii ENSDORG00000012333 I
SREBF1 Equus caballus ENSECAG00000019802 I
SREBF1 Echinops telfairi ENSETEG00000004179 I
SREBF1 Felis catus ENSFCAG00000001983 I
SREBF1 Homo sapiens ENSG00000072310 D
srebf1 Gasterosteus aculeatus ENSGACG00000012064 I
SREBF1 Gallus gallus ENSGALG00000027188 I
SREBF1 Gorilla gorilla ENSGGOG00000002713 I
SREBF1 Loxodonta africana ENSLAFG00000021644 I
SREBF1 Microcebus murinus ENSMICG00000012535 I
SREBF1 Macaca mulatta ENSMMUG00000023375 I
SREBF1 Monodelphis domestica ENSMODG00000014074 I
Srebf1 Mus musculus ENSMUSG00000020538 D
SREBF1 Ornithorhynchus anatinus ENSOANG00000012278 I
SREBF1 Otolemur garnettii ENSOGAG00000002910 I
SREBF1 Ochotona princeps ENSOPRG00000015069 I
srebf1 Oryzias latipes ENSORLG00000009437 I
SREBF1 Procavia capensis ENSPCAG00000014903 I
SREBF1 Pteropus vampyrus ENSPVAG00000005765 I
Srebf1 Rattus norvegicus ENSRNOG00000003463 I
SREBF1 Taeniopygia guttata ENSTGUG00000007313 I
srebf1 Tetraodon nigroviridis ENSTNIG00000011957 I
srebf1 Takifugu rubripes ENSTRUG00000008197 I
srebf1 Xenopus tropicalis XB-GENE-987572 I
SREBF2 Anolis carolinensis ENSACAG00000004146 I
SREBF2 Bos taurus ENSBTAG00000014265 I
SREBF2 Canis familiaris ENSCAFG00000001013 I
SREBF2 Cavia porcellus ENSCPOG00000013199 I
srebf2 Danio rerio ENSDARG00000063438 I
SREBF2 Dasypus novemcinctus ENSDNOG00000048031 I
Srebf2 Dipodomys ordii ENSDORG00000000691 I
SREBF2 Equus caballus ENSECAG00000024608 I
SREBF2 Erinaceus europaeus ENSEEUG00000003437 I
SREBF2 Echinops telfairi ENSETEG00000000459 I
SREBF2 Felis catus ENSFCAG00000014289 I
SREBF2 Homo sapiens ENSG00000198911 D
srebf2 Gasterosteus aculeatus ENSGACG00000007259 I
SREBF2 Gorilla gorilla ENSGGOG00000012065 I
SREBF2 Loxodonta africana ENSLAFG00000005791 I
SREBF2 Meleagris gallopavo ENSMGAG00000012074 I
SREBF2 Microcebus murinus ENSMICG00000000913 I
SREBF2 Myotis lucifugus ENSMLUG00000002549 I
SREBF2 Macaca mulatta ENSMMUG00000003357 I
SREBF2 Monodelphis domestica ENSMODG00000016612 I
Srebf2 Mus musculus ENSMUSG00000022463 D
SREBF2 Ornithorhynchus anatinus ENSOANG00000002461 I
SREBF2 Oryctolagus cuniculus ENSOCUG00000003178 I
SREBF2 Otolemur garnettii ENSOGAG00000014736 I
srebf2 Oryzias latipes ENSORLG00000014672 I
SREBF2 Procavia capensis ENSPCAG00000006497 I
SREBF2 Pan troglodytes ENSPTRG00000014439 I
SREBF2 Pteropus vampyrus ENSPVAG00000001177 I
Srebf2 Rattus norvegicus ENSRNOG00000007400 I
SREBF2 Sus scrofa ENSSSCG00000026092 I
SREBF2 Tupaia belangeri ENSTBEG00000016542 I
srebf2 Tetraodon nigroviridis ENSTNIG00000010835 I
srebf2 Takifugu rubripes ENSTRUG00000007413 I
SREBF2 Tursiops truncatus ENSTTRG00000017350 I
srebf2 Xenopus tropicalis XB-GENE-1011360 I
srebf2.L Xenopus laevis XB-GENE-1011364 I
SREBP Drosophila pseudoobscura FBgn0081122 I
SREBP Drosophila ananassae FBgn0100584 I
SREBP Drosophila erecta FBgn0108291 I
SREBP Drosophila grimshawi FBgn0122129 I
SREBP Drosophila mojavensis FBgn0134398 I
SREBP Drosophila persimilis FBgn0153336 I
SREBP Drosophila sechellia FBgn0174544 I
SREBP Drosophila simulans FBgn0186498 I
SREBP Drosophila virilis FBgn0198580 I
SREBP Drosophila willistoni FBgn0219495 I
SREBP Drosophila yakuba FBgn0236960 I
Tal_R010023 Tyto alba Tal_R010023 I
TC007163 Tribolium castaneum TC007163 I
tetur08g03870 Tetranychus urticae tetur08g03870 I
XP_002944649 Xenopus tropicalis XP_002944649 I
YQE_07365 Dendroctonus ponderosae YQE_07365 I