CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCF21
(
Bos taurus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSBTAG00000021827
T033108_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tcf21
M01746_2.00
Mus musculus
RMCAKMTGK
MCAKMTGKY
PBM
Weirauch et al.(2014)
pTH5087
0.914
1.000
Tcf21
M02819_2.00
Mus musculus
VNAACAGCTGTTVN
NBAACAGCTGTTNB
SELEX
Jolma et al.(2013)
Tcf21_1
0.914
1.000
TCF21
M04092_2.00
Homo sapiens
BAACAGCTGBYN
NRVCAGCTGTTV
SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_1
0.914
1.000
TCF21
M04093_2.00
Homo sapiens
NRCCATATGKYV
BRMCATATGGYN
SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_2
0.914
1.000
TCF21
M04094_2.00
Homo sapiens
BAACAGCTGTYV
BRACAGCTGTTV
SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_1
0.914
1.000
TCF21
M04095_2.00
Homo sapiens
BACCATATGKYV
BRMCATATGGTV
SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_2
0.914
1.000
Msc
M01730_2.00
Mus musculus
NVCRKMYGBN
NVCRKMYGBN
PBM
Weirauch et al.(2014)
pTH5112
0.914
0.981
MSC
M02801_2.00
Homo sapiens
AACAGCTGTT
AACAGCTGTT
SELEX
Jolma et al.(2013)
MSC_1
0.914
0.981
MSC
M04183_2.00
Homo sapiens
NRMCAGMTGBYN
NRVCAKCTGKYN
SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_1
0.914
0.981
MSC
M04184_2.00
Homo sapiens
NRVCAYVTGBYN
NRVCABRTGBYN
SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_2
0.914
0.981
MSC
M04187_2.00
Homo sapiens
NRMCAGCTGBYV
BRVCAGCTGKYN
SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_1
0.914
0.981
MSC
M04188_2.00
Homo sapiens
BRMCATATGKYN
NRMCATATGKYV
SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_2
0.914
0.981
MSC
M04185_2.00
Homo sapiens
NRVCAGCTGBBN
NVVCAGCTGBYN
SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_1
0.914
0.981
MSC
M04186_2.00
Homo sapiens
BRMCATATGKYV
BRMCATATGKYV
SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_2
0.914
0.981
MSC
M04189_2.00
Homo sapiens
BRACAGCTGTYV
BRACAGCTGTYV
SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_1
0.914
0.981
MSC
M04190_2.00
Homo sapiens
BRMCATATGKYV
BRMCATATGKYV
SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_2
0.914
0.981
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000029098
bHLH
80
132
QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLR
Links
Other
bHLH
family TFs
Other
Bos taurus
TFs
184 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSAMEG00000005235
Ailuropoda melanoleuca
ENSAMEG00000005235
N
0.000
ENSAMXG00000014722
Astyanax mexicanus
ENSAMXG00000014722
N
0.000
ENSCPOG00000006428
Cavia porcellus
ENSCPOG00000006428
N
0.000
ENSCSAG00000006785
Chlorocebus sabaeus
ENSCSAG00000006785
N
0.000
ENSGMOG00000015548
Gadus morhua
ENSGMOG00000015548
N
0.000
ENSLOCG00000003056
Lepisosteus oculatus
ENSLOCG00000003056
N
0.000
ENSNLEG00000004615
Nomascus leucogenys
ENSNLEG00000004615
N
0.000
ENSOARG00000019468
Ovis aries
ENSOARG00000019468
N
0.000
ENSONIG00000014090
Oreochromis niloticus
ENSONIG00000014090
N
0.000
ENSP00000420721
Macaca fascicularis
ENSP00000420721
N
0.000
ENSP00000420721-D1
Bos grunniens
ENSP00000420721-D1
N
0.000
ENSPANG00000019193
Papio anubis
ENSPANG00000019193
N
0.000
ENSPFOG00000009350
Poecilia formosa
ENSPFOG00000009350
N
0.000
ENSPPYG00000013537
Pongo abelii
ENSPPYG00000013537
N
0.000
ENSSHAG00000006667
Sarcophilus harrisii
ENSSHAG00000006667
N
0.000
ENSSTOG00000029223
Ictidomys tridecemlineatus
ENSSTOG00000029223
N
0.000
Myotis_brandtii_KIAA2018_10016078
Myotis brandtii
Myotis_brandtii_KIAA2018_10016078
N
0.000
usf3
Gasterosteus aculeatus
ENSGACG00000003204
N
0.000
usf3
Danio rerio
ENSDARG00000077431
N
0.000
USF3
Dasypus novemcinctus
ENSDNOG00000040900
N
0.000
USF3
Equus caballus
ENSECAG00000024549
N
0.000
USF3
Vicugna pacos
ENSVPAG00000011950
N
0.000
USF3
Tursiops truncatus
ENSTTRG00000000281
N
0.000
USF3
Felis catus
ENSFCAG00000004876
N
0.000
USF3
Sus scrofa
ENSSSCG00000011918
N
0.000
USF3
Homo sapiens
ENSG00000176542
N
0.000
Usf3
Rattus norvegicus
ENSRNOG00000027756
N
0.000
USF3
Pteropus vampyrus
ENSPVAG00000006151
N
0.000
USF3
Pan troglodytes
ENSPTRG00000030159
N
0.000
USF3
Myotis lucifugus
ENSMLUG00000004274
N
0.000
USF3
Gorilla gorilla
ENSGGOG00000001005
N
0.000
USF3
Callithrix jacchus
ENSCJAG00000020264
N
0.000
usf3
Oryzias latipes
ENSORLG00000009097
N
0.000
USF3
Ochotona princeps
ENSOPRG00000014253
N
0.000
USF3
Loxodonta africana
ENSLAFG00000009455
N
0.000
USF3
Otolemur garnettii
ENSOGAG00000032665
N
0.000
USF3
Oryctolagus cuniculus
ENSOCUG00000013550
N
0.000
USF3
Canis familiaris
ENSCAFG00000010692
N
0.000
USF3
Bos taurus
ENSBTAG00000021000
N
0.000
Usf3
Mus musculus
ENSMUSG00000068284
N
0.000
USF3
Monodelphis domestica
ENSMODG00000018158
N
0.000