NEUROD4 (Gasterosteus aculeatus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSGACG00000000702 T034355_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NEUROD1
M04148_2.00 		Homo sapiens
RMCATATGKYVNNNTAWTT
AAWTANNNBRMCATATGKY		 SELEX
Yin et al.(2017)
NEUROD1_FL_HT-SELEX 		0.880 0.827
NEUROD1
M08057_2.00 		Homo sapiens
NNVCAGATGGNNN
NNNCCATCTGBNN		 ChIP-seq
Mathelier et al.(2014)
MA1109.1 		0.880 0.827
NEUROD1
M08735_2.00 		Homo sapiens
RVCAGATGGY
RCCATCTGBY		 Misc
Kulakovskiy et al.(2013)
NDF1_HUMAN.H11MO.0.A 		0.880 0.827
Neurod1
M08764_2.00 		Mus musculus
RVCAGATGGY
RCCATCTGBY		 Misc
Kulakovskiy et al.(2013)
NDF1_MOUSE.H11MO.0.A 		0.880 0.827
Neurod1
M09474_2.00 		Mus musculus
RVCAGATGGY
RCCATCTGBY		 Misc
Heinz et al.(2010)
Islet-NeuroD1_GSE30298 		0.880 0.827
NEUROD1
M09873_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NEUROD_01 		0.880 0.827
NEUROD1
M09874_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NEUROD_02 		0.880 0.827
NEUROD1
M04149_2.00 		Homo sapiens
RVCATATGBYVYNBTAWTW
WAWTAVNRBRVCATATGBY		 SELEX
Yin et al.(2017)
NEUROD1_FL_Methyl-HT-SELEX 		0.880 0.827
NEUROD2
M02795_2.00 		Homo sapiens
RVCATATGKY
RMCATATGBY		 SELEX
Jolma et al.(2013)
NEUROD2_1 		0.845 0.808
NEUROD2
M04160_2.00 		Homo sapiens
RVCATATGKY
RMCATATGBY		 SELEX
Yin et al.(2017)
NEUROD2_FL_HT-SELEX 		0.845 0.808
NEUROD2
M08737_2.00 		Homo sapiens
RRCAGMTGG
CCAKCTGYY		 Misc
Kulakovskiy et al.(2013)
NDF2_HUMAN.H11MO.0.B 		0.845 0.808
Neurod2
M08770_2.00 		Mus musculus
RVCAGATGGB
VCCATCTGBY		 Misc
Kulakovskiy et al.(2013)
NDF2_MOUSE.H11MO.0.A 		0.845 0.808
NEUROD2
M04161_2.00 		Homo sapiens
RMCATATGBY
RVCATATGKY		 SELEX
Yin et al.(2017)
NEUROD2_FL_Methyl-HT-SELEX 		0.845 0.808
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000000907 bHLH 94 146

Links

Other bHLH family TFs
Other Gasterosteus aculeatus TFs

269 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA029546 Oryza indica BGIOSGA029546 N 0.000
BRADI4G33740 Brachypodium distachyon BRADI4G33740 N 0.000
GRMZM2G006578 Zea mays GRMZM2G006578 N 0.000
GRMZM2G060290 Zea mays GRMZM2G060290 N 0.000
GRMZM2G125934 Zea mays GRMZM2G125934 N 0.000
LPERR09G10860 Leersia perrieri LPERR09G10860 N 0.000
MLOC_68986 Hordeum vulgare MLOC_68986 N 0.000
OB09G21260 Oryza brachyantha OB09G21260 N 0.000
OBART09G14730 Oryza barthii OBART09G14730 N 0.000
OGLUM09G15360 Oryza glumaepatula OGLUM09G15360 N 0.000
OMERI09G11450 Oryza meridionalis OMERI09G11450 N 0.000
ONIVA08G17430 Oryza nivara ONIVA08G17430 N 0.000
OPUNC09G13200 Oryza punctata OPUNC09G13200 N 0.000
ORGLA09G0113500 Oryza glaberrima ORGLA09G0113500 N 0.000
ORUFI09G15880 Oryza rufipogon ORUFI09G15880 N 0.000
OS09G0489500 Oryza sativa OS09G0489500 N 0.000
Pavir.Ba01723 Panicum virgatum Pavir.Ba01723 N 0.000
Pavir.Db00756 Panicum virgatum Pavir.Db00756 N 0.000
Pavir.J32240 Panicum virgatum Pavir.J32240 N 0.000
PGSC0003DMG400011430 Solanum tuberosum PGSC0003DMG400011430 I 0.000
Sb02g028380 Sorghum bicolor Sb02g028380 N 0.000
Sb10g024190 Sorghum bicolor Sb10g024190 N 0.000
Si006417m.g Setaria italica Si006417m.g N 0.000
Si029606m.g Setaria italica Si029606m.g N 0.000
Solyc10g078670.1 Solanum lycopersicum Solyc10g078670.1 I 0.000
Traes_5AL_39649C38E Triticum aestivum Traes_5AL_39649C38E N 0.000
Traes_5BL_C08428870 Triticum aestivum Traes_5BL_C08428870 N 0.000
Traes_5DL_1950C1FC2 Triticum aestivum Traes_5DL_1950C1FC2 N 0.000