CLOCK (Gallus gallus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSGALG00000013793 T034517_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Clock
M01735_2.00 		Mus musculus
NNCAYRTGNN
NNCAYRTGNN		 PBM
Weirauch et al.(2014)
pTH5056 		0.914 1.000
CLOCK
M02789_2.00 		Homo sapiens
DACACGTGYH
DRCACGTGTH		 SELEX
Jolma et al.(2013)
CLOCK_1 		0.914 1.000
CLOCK
M04129_2.00 		Homo sapiens
NMCACGTGYN
NRCACGTGKN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_HT-SELEX 		0.914 1.000
CLOCK
M08728_2.00 		Homo sapiens
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_HUMAN.H11MO.0.C 		0.914 1.000
Clock
M08760_2.00 		Mus musculus
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_MOUSE.H11MO.0.C 		0.914 1.000
Clock
M09473_2.00 		Mus musculus
CACGTGNN
NNCACGTG		 Misc
Heinz et al.(2010)
Liver-Clock_GSE39860 		0.914 1.000
CLOCK
M09849_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CLOCK_Q6 		0.914 1.000
CLOCK
M04130_2.00 		Homo sapiens
NRCRCRTGBH
DVCAYGYGYN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000036747 bHLH 35 85
ENSGALP00000036748 bHLH 35 85

Links

Other bHLH family TFs
Other Gallus gallus TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F443_07993 Phytophthora parasitica F443_07993 N
fgenesh_scip_prom.28083.11830 Phytophthora lateralis fgenesh_scip_prom.28083.11830 N
fgenesh_scip_prom.46568.2763 Phytophthora kernoviae fgenesh_scip_prom.46568.2763 N
maker-pve_contig_664-snap-gene-0.9 Pythium vexans maker-pve_contig_664-snap-gene-0.9 N
Phyra93231 Phytophthora ramorum Phyra93231 N
Physo130061 Phytophthora sojae Physo130061 N
PITG_00215 Phytophthora infestans PITG_00215 N
PYU1_G003977 Pythium ultimum PYU1_G003977 N
snap_masked-par_contig_517-abinit-gene-0.15 Pythium arrhenomanes snap_masked-par_contig_517-abinit-gene-0.15 N