TCF4 (Loxodonta africana)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSLAFG00000013449 T034933_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.914 1.000
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.914 1.000
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.914 1.000
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.914 1.000
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.914 1.000
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.914 1.000
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.914 1.000
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.914 1.000
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.912 0.962
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.912 0.962
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.912 0.962
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.912 0.962
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.912 0.962
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.912 0.962
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.912 0.962
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.912 0.962
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.912 0.962
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.912 0.962
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.912 0.962
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.912 0.962
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.912 0.962
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.912 0.962
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.912 0.885
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.912 0.885
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.912 0.885
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.884 0.923
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.884 0.923
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.884 0.923
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.884 0.885
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.884 0.885
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.884 0.885
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.884 0.885
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.884 0.885
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.884 0.885
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.884 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000011258 bHLH 591 644

Links

Other bHLH family TFs
Other Loxodonta africana TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R003120 Calypte anna Aan_R003120 I
Afo_R012275 Aptenodytes forsteri Afo_R012275 I
Alligator_sinensis_CCG022066.1 Alligator sinensis Alligator_sinensis_CCG022066.1 I
BHLHA15 Tursiops truncatus ENSTTRG00000015701 I
bhlha15 Oryzias latipes ENSORLG00000003401 I
BHLHA15 Pan troglodytes ENSPTRG00000019434 I
BHLHA15 Otolemur garnettii ENSOGAG00000010106 I
BHLHA15 Oryctolagus cuniculus ENSOCUG00000025058 I
BHLHA15 Ornithorhynchus anatinus ENSOANG00000001937 I
Bhlha15 Rattus norvegicus ENSRNOG00000025164 I
Bhlha15 Mus musculus ENSMUSG00000052271 D
bhlha15 Tetraodon nigroviridis ENSTNIG00000012887 I
BHLHA15 Monodelphis domestica ENSMODG00000025044 I
bhlha15 Takifugu rubripes ENSTRUG00000016815 I
BHLHA15 Myotis lucifugus ENSMLUG00000009476 I
BHLHA15 Meleagris gallopavo ENSMGAG00000015527 I
BHLHA15 Loxodonta africana ENSLAFG00000000139 I
bhlha15 Gasterosteus aculeatus ENSGACG00000009403 I
BHLHA15 Homo sapiens ENSG00000180535 D
bhlha15 Danio rerio ENSDARG00000045166 I
BHLHA15 Callithrix jacchus ENSCJAG00000023085 I
BHLHA15 Canis familiaris ENSCAFG00000015425 I
BHLHA15 Bos taurus ENSBTAG00000046010 I
Brh_R005630 Buceros rhinoceros Brh_R005630 I
Cmyd_10012423 Chelonia mydas Cmyd_10012423 I
ENSACAG00000012378 Anolis carolinensis ENSACAG00000012378 I
ENSAMXG00000025873 Astyanax mexicanus ENSAMXG00000025873 I
ENSAPLG00000001024 Anas platyrhynchos ENSAPLG00000001024 I
ENSCPOG00000009423 Cavia porcellus ENSCPOG00000009423 I
ENSCSAG00000019492 Chlorocebus sabaeus ENSCSAG00000019492 I
ENSECAG00000012532 Equus caballus ENSECAG00000012532 I
ENSGMOG00000003972 Gadus morhua ENSGMOG00000003972 I
ENSLACG00000013715 Latimeria chalumnae ENSLACG00000013715 I
ENSMMUG00000015478 Macaca mulatta ENSMMUG00000015478 I
ENSMPUG00000020102 Mustela putorius furo ENSMPUG00000020102 I
ENSNLEG00000018875 Nomascus leucogenys ENSNLEG00000018875 I
ENSONIG00000021203 Oreochromis niloticus ENSONIG00000021203 I
ENSP00000326391 Macaca fascicularis ENSP00000326391 I
ENSP00000326391-D1 Bos grunniens ENSP00000326391-D1 I
ENSPFOG00000013242 Poecilia formosa ENSPFOG00000013242 I
ENSPPYG00000017361 Pongo abelii ENSPPYG00000017361 I
ENSPSIG00000001236 Pelodiscus sinensis ENSPSIG00000001236 I
ENSSHAG00000015620 Sarcophilus harrisii ENSSHAG00000015620 I
ENSSSCG00000007600 Sus scrofa ENSSSCG00000007600 I
ENSSTOG00000009728 Ictidomys tridecemlineatus ENSSTOG00000009728 I
ENSXMAG00000014837 Xiphophorus maculatus ENSXMAG00000014837 I
estExt_fgenesh2_pg.C_2400032 Branchiostoma floridae estExt_fgenesh2_pg.C_2400032 I
Gfo_R007094 Geospiza fortis Gfo_R007094 I
Ogr03050 Ophisaurus gracilis Ogr03050 I
Pvit_16465 Pogona vitticeps Pvit_16465 I
Tal_R009599 Tyto alba Tal_R009599 I
XP_002931994 Xenopus tropicalis XP_002931994 I