CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

TCF12 *(Monodelphis domestica)* bHLH
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00010 (HLH)	IPR001092	ENSMODG00000008311	T035494_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Tcf12 M01740_2.00	Mus musculus	NVCAYCTGB	VCAGRTGBN	PBM Weirauch et al.(2014) pTH5071	0.914	1.000
TCF12 M04137_2.00	Homo sapiens	VCACSTGB	VCASGTGB	SELEX Yin et al.(2017) TCF12_eDBD_HT-SELEX	0.914	1.000
Tcf12 M08062_2.00	Mus musculus	RRCAGCTGNNN	NNNCAGCTGYY	ChIP-seq Mathelier et al.(2014) MA0521.1	0.914	1.000
TCF12 M07805_2.00	Homo sapiens	NVDSCAGSTGB	VCASCTGSHBN	ChIP-seq Gerstein et al.(2012) GM12878_TCF12_HudsonAlpha	0.914	1.000
TCF12 M07806_2.00	Homo sapiens	VCASCTGB	VCAGSTGB	ChIP-seq Gerstein et al.(2012) H1-hESC_TCF12_HudsonAlpha	0.914	1.000
TCF12 M08731_2.00	Homo sapiens	CMCASCTGSH	DSCAGSTGKG	Misc Kulakovskiy et al.(2013) HTF4_HUMAN.H11MO.0.A	0.914	1.000
Tcf12 M08762_2.00	Mus musculus	VMCASCTGSH	DSCAGSTGKB	Misc Kulakovskiy et al.(2013) HTF4_MOUSE.H11MO.0.A	0.914	1.000
TCF12 M09458_2.00	Homo sapiens	NNVCAGCTGB	VCAGCTGBNN	Misc Heinz et al.(2010) GM12878-Tcf12_GSE32465	0.914	1.000
TCF12 M09858_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HEB_Q6	0.914	1.000
TCF12 M09859_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HTF4_Q2	0.914	1.000
TCF12 M09860_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF12_01	0.914	1.000
TCF12 M09861_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF12_03	0.914	1.000
TCF12 M09862_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TCF12_05	0.914	1.000
TCF12 M04138_2.00	Homo sapiens	NCAYCTGN	NCAGRTGN	SELEX Yin et al.(2017) TCF12_eDBD_Methyl-HT-SELEX	0.914	1.000
Tcf3 M00753_2.00	Mus musculus	VCACCTGBN	NVCAGGTGB	PBM Weirauch et al.(2013) pTH3866	0.914	0.885
Tcf3 M01723_2.00	Mus musculus	NNVCACSTGB	VCASGTGBNN	PBM Weirauch et al.(2014) pTH4580	0.914	0.885
Tcf3 M00118_2.00	Mus musculus	VCAYCTGB	VCAGRTGB	PBM Badis et al.(2009) Tcfe2a_3865	0.914	0.885
Tcf4 M01750_2.00	Mus musculus	VCAGVTGBN	NVCABCTGB	PBM Weirauch et al.(2014) pTH5101	0.912	0.962
TCF4 M02807_2.00	Homo sapiens	HRCACCTGBN	NVCAGGTGYD	SELEX Jolma et al.(2013) TCF4_1	0.912	0.962
TCF4 M02808_2.00	Homo sapiens	NVCACCTBBN	NVVAGGTGBN	SELEX Jolma et al.(2013) TCF4_2	0.912	0.962
TCF4 M02728_2.00	Homo sapiens	RCACCTG	CAGGTGY	SELEX Jolma et al.(2010) TCF4_dimer	0.912	0.962
TCF4 M04214_2.00	Homo sapiens	VCACCTGB	VCAGGTGB	SELEX Yin et al.(2017) TCF4_eDBD_HT-SELEX	0.912	0.962
Tcf4 M08775_2.00	Mus musculus	HRCACCTGB	VCAGGTGYD	Misc Kulakovskiy et al.(2013) ITF2_MOUSE.H11MO.0.B	0.912	0.962
TCF4 M09461_2.00	Homo sapiens	ASWTCAAAGRVN	NBYCTTTGAWST	Misc Heinz et al.(2010) Hct116-Tcf4_SRA012054	0.912	0.962
TCF4 M04215_2.00	Homo sapiens	VCACCTGN	NCAGGTGB	SELEX Yin et al.(2017) TCF4_eDBD_Methyl-HT-SELEX	0.912	0.962
Tcf3 M09465_2.00	Mus musculus	ABWTCAAAGS	SCTTTGAWVT	Misc Heinz et al.(2010) mES-Tcf3_GSE11724	0.886	0.962
Tcf3 M09466_2.00	Mus musculus	VCAGCTGBNN	NNVCAGCTGB	Misc Heinz et al.(2010) proBcell-E2A_GSE21978	0.886	0.962
Tcf3 M09886_2.00	Mus musculus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E47_05	0.886	0.962
TCF3 M02775_2.00	Homo sapiens	NVCACCTGBN	NVCAGGTGBN	SELEX Jolma et al.(2013) TCF3_1	0.886	0.923
TCF3 M08710_2.00	Homo sapiens	VVCASCTGCHN	NDGCAGSTGBB	Misc Kulakovskiy et al.(2013) TFE2_HUMAN.H11MO.0.A	0.886	0.923
TCF3 M09791_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E12_Q6	0.886	0.923
TCF3 M09792_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E2A_Q6_01	0.886	0.923
TCF3 M09793_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$E2A_Q6_02	0.886	0.923
TCF3 M09794_2.00	Homo sapiens	VVVVMCACCTGCNBB	VVNGCAGGTGKBBBB	Transfac Matys et al.(2006) V$E47_01	0.886	0.923
TCF3 M09795_2.00	Homo sapiens	NNKWRCACCTGYDNNN	NNNHRCAGGTGYWMNN	Transfac Matys et al.(2006) V$E47_02	0.886	0.923
For this family, TFs with SR scores > 0.838* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSMODP00000010326	bHLH	602	655	RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLLILHQAVAVILSLE

Links
Other bHLH family TFs
Other *Monodelphis domestica* TFs

212 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
A1O1_08385	Capronia coronata	A1O1_08385	N	0.000
A1O3_03391	Capronia epimyces	A1O3_03391	N	0.000
A1O5_11365	Cladophialophora psammophila	A1O5_11365	N	0.000
A1O7_03466	Cladophialophora yegresii	A1O7_03466	N	0.000
A1O9_03482	Exophiala aquamarina	A1O9_03482	N	0.000
A1Q1_05726	Trichosporon asahii	A1Q1_05726	N	0.000
AB10138.1	Alternaria brassicicola	AB10138.1	N	0.000
ACLA_098630	Aspergillus clavatus	CADACLAG00009192	N	0.000
ACRE_025880	Acremonium chrysogenum	ACRE_025880	N	0.000
AFUA_6G01910	Aspergillus fumigatus	CADAFUAG00000742	N	0.000
ANIA_08663	Aspergillus nidulans	CADANIAG00006382	N	0.000
AOL_s00004g650	Arthrobotrys oligospora	AOL_s00004g650	N	0.000
AUEXF2481DRAFT_253	Aureobasidium subglaciale	AUEXF2481DRAFT_253	N	0.000
BAUCODRAFT_25915	Baudoinia compniacensis	BAUCODRAFT_25915	N	0.000
BBA_06761	Beauveria bassiana	BBA_06761	N	0.000
Bcin09g03260	Botrytis cinerea	Bcin09g03260	N	0.000
BDDG_05927	Blastomyces dermatitidis	BDDG_05927	N	0.000
CADANGAG00010354	Aspergillus niger	CADANGAG00010354	N	0.000
CADAORAG00003951	Aspergillus oryzae	CADAORAG00003951	N	0.000
CCM_03290	Cordyceps militaris	CCM_03290	N	0.000
CFIO01_13438	Colletotrichum fioriniae	CFIO01_13438	N	0.000
CGGC5_4986	Colletotrichum gloeosporioides	CGGC5_4986	N	0.000
CHGG_06468	Chaetomium globosum	CHGG_06468	N	0.000
CIMG_10011	Coccidioides immitis	CIMG_10011	N	0.000
CMQ_5801	Grosmannia clavigera	CMQ_5801	N	0.000
CNA00590	Cryptococcus neoformans	CNA00590	N	0.000
Cob_05055	Colletotrichum orbiculare	Cob_05055	N	0.000
COCC4DRAFT_55668	Bipolaris maydis	COCC4DRAFT_55668	N	0.000
COCCADRAFT_32084	Bipolaris zeicola	COCCADRAFT_32084	N	0.000
COCMIDRAFT_103010	Bipolaris oryzae	COCMIDRAFT_103010	N	0.000
COCSADRAFT_206558	Bipolaris sorokiniana	COCSADRAFT_206558	N	0.000
COCVIDRAFT_24205	Bipolaris victoriae	COCVIDRAFT_24205	N	0.000
CPC735_011670	Coccidioides posadasii	CPC735_011670	N	0.000
CPUR_00530	Claviceps purpurea	CPUR_00530	N	0.000
CSUB01_05287	Colletotrichum sublineola	CSUB01_05287	N	0.000
DOTSEDRAFT_67771	Dothistroma septosporum	DOTSEDRAFT_67771	N	0.000
E5Q_04609	Mixia osmundae	E5Q_04609	N	0.000
EPUS_09223	Endocarpon pusillum	EPUS_09223	N	0.000
estExt_fgenesh1_pg.C_20124	Cochliobolus heterostrophus C5	estExt_fgenesh1_pg.C_20124	N	0.000
estExt_Genewise1Plus.C_270001	Mycosphaerella fijiensis	estExt_Genewise1Plus.C_270001	N	0.000
EURHEDRAFT_379601	Aspergillus ruber	EURHEDRAFT_379601	N	0.000
e_gw1.00855.137.1	Aspergillus carbonarius	e_gw1.00855.137.1	N	0.000
F503_01231	Ophiostoma piceae uamh	F503_01231	N	0.000
FFUJ_06212	Fusarium fujikuroi	FFUJ_06212	N	0.000
fgenesh1_pg.C_chr_4000068	Mycosphaerella graminicola	fgenesh1_pg.C_chr_4000068	N	0.000
fgenesh1_pg.C_scaffold_5000369	Cryphonectria parasitica	fgenesh1_pg.C_scaffold_5000369	N	0.000
fgenesh1_pg.sca_2_chr3_3_0000569	Nectria haematococca	fgenesh1_pg.sca_2_chr3_3_0000569	N	0.000
fgeneshTM_pg.3_#_565	Tremella mesenterica	fgeneshTM_pg.3_#_565	N	0.000
FGRRES_13314	Fusarium graminearum	FGRRES_13314	N	0.000
FPSE_11722	Fusarium pseudograminearum	FPSE_11722	N	0.000
G647_04916	Cladophialophora carrionii	G647_04916	N	0.000
GGTG_13637	Gaeumannomyces graminis	GGTG_13637	N	0.000
GLOINDRAFT_57012	Rhizophagus irregularis	GLOINDRAFT_57012	N	0.000
GLRG_02556	Colletotrichum graminicola	GLRG_02556	N	0.000
GSTUM_00012172001	Tuber melanosporum	GSTUM_00012172001	N	0.000
H101_05228	Trichophyton interdigitale	H101_05228	N	0.000
HCBG_02937	Histoplasma capsulatum	HCBG_02937	N	0.000
HMPREF1120_05517	Exophiala dermatitidis	HMPREF1120_05517	N	0.000
HMPREF1541_04432	Cyphellophora europaea	HMPREF1541_04432	N	0.000
HMPREF1624_03444	Sporothrix schenckii	HMPREF1624_03444	N	0.000
K437DRAFT_207589	Tilletiaria anomala	K437DRAFT_207589	N	0.000
L804_00889	Cryptococcus gattii	L804_00889	N	0.000
LEMA_P039000.1	Leptosphaeria maculans	LEMA_P039000.1	N	0.000
M437DRAFT_84576	Aureobasidium melanogenum	M437DRAFT_84576	N	0.000
MAC_00863	Metarhizium acridum	MAC_00863	N	0.000
MAJ_03920	Metarhizium majus	MAJ_03920	N	0.000
MAM_03278	Metarhizium album	MAM_03278	N	0.000
MANI_016888	Metarhizium anisopliae	MANI_016888	N	0.000
MAPG_02278	Magnaporthe poae	MAPG_02278	N	0.000
MBM_07327	Marssonina brunnea	MBM_07327	N	0.000
MBR_08043	Metarhizium brunneum	MBR_08043	N	0.000
MCYG_02967	Microsporum canis	MCYG_02967	N	0.000
MCYG_02967	Arthroderma otae	MCYG_02967	N	0.000
MELLADRAFT_93250	Melampsora laricipopulina	MELLADRAFT_93250	N	0.000
MGG_02775	Magnaporthe oryzae	MGG_02775	N	0.000
MGU_03549	Metarhizium guizhouense	MGU_03549	N	0.000
MGYG_00137	Microsporum gypseum	MGYG_00137	N	0.000
MPH_04625	Macrophomina phaseolina	MPH_04625	N	0.000
MYCFIDRAFT_122488	Pseudocercospora fijiensis	MYCFIDRAFT_122488	N	0.000
Mycgr3G92288	Zymoseptoria tritici	Mycgr3G92288	N	0.000
MYCTH_90344	Myceliophthora thermophila	MYCTH_90344	N	0.000
NCU10006	Neurospora crassa	NCU10006	N	0.000
NechaG77847	Fusarium solani	NechaG77847	N	0.000
NEUTE1DRAFT_88983	Neurospora tetrasperma	NEUTE1DRAFT_88983	N	0.000
NFIA_048100	Neosartorya fischeri	CADNFIAG00005493	N	0.000
OCS_04791	Ophiocordyceps sinensis	OCS_04791	N	0.000
OIDMADRAFT_33584	Oidiodendron maius	OIDMADRAFT_33584	N	0.000
OIDMADRAFT_42045	Oidiodendron maius	OIDMADRAFT_42045	N	0.000
PAAG_04481	Paracoccidioides sp lutzii	PAAG_04481	N	0.000
PABG_04270	Paracoccidioides brasiliensis	PABG_04270	N	0.000
PAN0_014d5008	Pseudozyma antarctica	PAN0_014d5008	N	0.000
Pc22g24540	Penicillium chrysogenum	Pc22g24540	N	0.000
PCH_Pc22g24540	Penicillium rubens	PCH_Pc22g24540	N	0.000
PDE_03324	Penicillium oxalicum	PDE_03324	N	0.000
PDIP_61380	Penicillium digitatum	PDIP_61380	N	0.000
PEX1_020090	Penicillium expansum	PEX1_020090	N	0.000
PFICI_13983	Pestalotiopsis fici	PFICI_13983	N	0.000
PFL1_04298	Pseudozyma flocculosa	PFL1_04298	N	0.000
PGTG_01851	Puccinia graminis	PGTG_01851	N	0.000
PGTG_08173	Puccinia graminis	PGTG_08173	N	0.000
PHSY_006070	Pseudozyma hubeiensis	PHSY_006070	N	0.000
PITC_054290	Penicillium italicum	PITC_054290	N	0.000
PMAA_093360	Talaromyces marneffei	PMAA_093360	N	0.000
PMAA_093360	Penicillium marneffei	PMAA_093360	N	0.000
PNEG_00487	Pneumocystis murina	PNEG_00487	N	0.000
PODANS_5_2850	Podospora anserina	PODANS_5_2850	N	0.000
PredSwiss_ASS2010_346.1	Pneumocystis carinii	PredSwiss_ASS2010_346.1	N	0.000
PredSwiss_CON450.1	Pneumocystis carinii	PredSwiss_CON450.1	N	0.000
PSEUBRA_SCAF15g05739	Pseudozyma brasiliensis	PSEUBRA_SCAF15g05739	N	0.000
PTTG_00616	Puccinia triticina	PTTG_00616	N	0.000
PTTG_00697	Puccinia triticina	PTTG_00697	N	0.000
PTTG_01068	Puccinia triticina	PTTG_01068	N	0.000
PTT_11110	Pyrenophora teres	PTT_11110	N	0.000
PV04_03664	Capronia semiimmersa	PV04_03664	N	0.000
PV05_05728	Exophiala xenobiotica	PV05_05728	N	0.000
PV06_02785	Exophiala oligosperma	PV06_02785	N	0.000
PV07_06539	Cladophialophora immunda	PV07_06539	N	0.000
PV08_11181	Exophiala spinifera	PV08_11181	N	0.000
PV09_07684	Verruconis gallopava	PV09_07684	N	0.000
PV10_05569	Exophiala mesophila	PV10_05569	N	0.000
PV11_01143	Exophiala sideris	PV11_01143	N	0.000
PVAR5_7539	Byssochlamys spectabilis	PVAR5_7539	N	0.000
SBOR_10021	Sclerotinia borealis	SBOR_10021	N	0.000
scaffold_2-snap.172.1	Neurospora discreta	scaffold_2-snap.172.1	N	0.000
SEPMUDRAFT_146030	Sphaerulina musiva	SEPMUDRAFT_146030	N	0.000
SETTUDRAFT_36611	Setosphaeria turcica	SETTUDRAFT_36611	N	0.000
SMAC_05222	Sordaria macrospora	SMAC_05222	N	0.000
SNOG_07349	Stagonospora nodorum	SNOG_07349	N	0.000
SNOG_07349	Phaeosphaeria nodorum	SNOG_07349	N	0.000
sr15751	Sporisorium reilianum	sr15751	N	0.000
SS1G_05250	Sclerotinia sclerotiorum	SS1G_05250	N	0.000
TEQG_06650	Trichophyton equinum	TEQG_06650	N	0.000
TESG_03183	Trichophyton tonsurans	TESG_03183	N	0.000
THITE_2111805	Thielavia terrestris	THITE_2111805	N	0.000
TRIATDRAFT_36070	Trichoderma atroviride	TRIATDRAFT_36070	N	0.000
TRIREDRAFT_122541	Trichoderma reesei	TRIREDRAFT_122541	N	0.000
TRIVIDRAFT_89428	Trichoderma virens	TRIVIDRAFT_89428	N	0.000
TSTA_047960	Talaromyces stipitatus	TSTA_047960	N	0.000
UHOR_07779	Ustilago hordei	UHOR_07779	N	0.000
UM04875	Ustilago maydis	UM04875	N	0.000
UREG_06011	Uncinocarpus reesii	UREG_06011	N	0.000
UV8b_1794	Ustilaginoidea virens	UV8b_1794	N	0.000
V499_02325	Pseudogymnoascus pannorum	V499_02325	N	0.000
VDAG_01773	Verticillium dahliae	VDAG_01773	N	0.000
VHEMI07809	Torrubiella hemipterigena	VHEMI07809	N	0.000
W97_05505	Coniosporium apollinis	W97_05505	N	0.000
X797_006345	Metarhizium robertsii	X797_006345	N	0.000
YALI0_F03157g	Yarrowia lipolytica	YALI0_F03157g	N	0.000
Z517_10262	Fonsecaea pedrosoi	Z517_10262	N	0.000
Z518_01412	Rhinocladiella mackenziei	Z518_01412	N	0.000
Z519_02093	Cladophialophora bantiana	Z519_02093	N	0.000

TCF12 (Monodelphis domestica) bHLH

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

212 Related TFs

TCF12 **(Monodelphis domestica)
bHLH**