Clock (Mus musculus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSMUSG00000029238 T035699_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Clock
M01735_2.00		 Mus musculus
NNCAYRTGNN
NNCAYRTGNN		 PBM
Weirauch et al.(2014)
pTH5056		 (Direct) (Direct)
Clock
M08760_2.00		 Mus musculus
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_MOUSE.H11MO.0.C		 (Direct) (Direct)
Clock
M09473_2.00		 Mus musculus
CACGTGNN
NNCACGTG		 Misc
Heinz et al.(2010)
Liver-Clock_GSE39860		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CLOCK
M02789_2.00 		Homo sapiens
DACACGTGYH
DRCACGTGTH		 SELEX
Jolma et al.(2013)
CLOCK_1 		0.914 1.000
CLOCK
M04129_2.00 		Homo sapiens
NMCACGTGYN
NRCACGTGKN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_HT-SELEX 		0.914 1.000
CLOCK
M08728_2.00 		Homo sapiens
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_HUMAN.H11MO.0.C 		0.914 1.000
CLOCK
M09849_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CLOCK_Q6 		0.914 1.000
CLOCK
M04130_2.00 		Homo sapiens
NRCRCRTGBH
DVCAYGYGYN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01735_2.00 bHLH 15 65

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000074656 bHLH 35 85
ENSMUSP00000143939 bHLH 35 85
ENSMUSP00000144022 bHLH 35 85

Links

Other bHLH family TFs
Other Mus musculus TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG017539.1 Alligator sinensis Alligator_sinensis_CCG017539.1 N
Cmyd_10007212 Chelonia mydas Cmyd_10007212 N
ENSAMEG00000019088 Ailuropoda melanoleuca ENSAMEG00000019088 N
ENSAPLG00000001368 Anas platyrhynchos ENSAPLG00000001368 N
ENSCSAG00000018613 Chlorocebus sabaeus ENSCSAG00000018613 N
ENSFALG00000014375 Ficedula albicollis ENSFALG00000014375 N
ENSGALG00000016390 Gallus gallus ENSGALG00000016390 N
ENSLACG00000007239 Latimeria chalumnae ENSLACG00000007239 N
ENSNLEG00000005201 Nomascus leucogenys ENSNLEG00000005201 N
ENSOARG00000020165 Ovis aries ENSOARG00000020165 N
ENSP00000314709 Macaca fascicularis ENSP00000314709 N
ENSP00000314709-D1 Bos grunniens ENSP00000314709-D1 N
ENSPANG00000002729 Papio anubis ENSPANG00000002729 N
ENSPSIG00000007720 Pelodiscus sinensis ENSPSIG00000007720 N
ENSSHAG00000011260 Sarcophilus harrisii ENSSHAG00000011260 N
ENSSTOG00000011248 Ictidomys tridecemlineatus ENSSTOG00000011248 N
Myotis_brandtii_ZHX2_10013265 Myotis brandtii Myotis_brandtii_ZHX2_10013265 N
Ogr14963 Ophisaurus gracilis Ogr14963 N
Pvit_18224 Pogona vitticeps Pvit_18224 N
ZHX2 Sorex araneus ENSSARG00000013090 N
ZHX2 Anolis carolinensis ENSACAG00000009402 N
ZHX2 Bos taurus ENSBTAG00000026309 N
ZHX2 Canis familiaris ENSCAFG00000000967 N
ZHX2 Callithrix jacchus ENSCJAG00000022247 N
ZHX2 Cavia porcellus ENSCPOG00000011867 N
ZHX2 Dasypus novemcinctus ENSDNOG00000018935 N
Zhx2 Dipodomys ordii ENSDORG00000014490 N
ZHX2 Tursiops truncatus ENSTTRG00000016360 N
ZHX2 Taeniopygia guttata ENSTGUG00000012413 N
ZHX2 Equus caballus ENSECAG00000023125 N
ZHX2 Sus scrofa ENSSSCG00000021586 N
ZHX2 Erinaceus europaeus ENSEEUG00000003152 N
ZHX2 Meleagris gallopavo ENSMGAG00000015867 N
Zhx2 Rattus norvegicus ENSRNOG00000005417 N
ZHX2 Pteropus vampyrus ENSPVAG00000003962 N
ZHX2 Felis catus ENSFCAG00000026338 N
ZHX2 Homo sapiens ENSG00000178764 N
ZHX2 Ochotona princeps ENSOPRG00000005053 N
ZHX2 Otolemur garnettii ENSOGAG00000026824 N
ZHX2 Oryctolagus cuniculus ENSOCUG00000008550 N
ZHX2 Gorilla gorilla ENSGGOG00000006502 N
ZHX2 Loxodonta africana ENSLAFG00000009019 N
Zhx2 Mus musculus ENSMUSG00000071757 N
ZHX2 Macaca mulatta ENSMMUG00000005363 N
ZHX2 Myotis lucifugus ENSMLUG00000009074 N