CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

CLOCK *(Ochotona princeps)* bHLH
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00010 (HLH)	IPR001092	ENSOPRG00000005292	T036326_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Clock M01735_2.00	Mus musculus	NNCAYRTGNN	NNCAYRTGNN	PBM Weirauch et al.(2014) pTH5056	0.914	1.000
CLOCK M02789_2.00	Homo sapiens	DACACGTGYH	DRCACGTGTH	SELEX Jolma et al.(2013) CLOCK_1	0.914	1.000
CLOCK M04129_2.00	Homo sapiens	NMCACGTGYN	NRCACGTGKN	SELEX Yin et al.(2017) CLOCK_eDBD_HT-SELEX	0.914	1.000
CLOCK M08728_2.00	Homo sapiens	DBBBCAYKTGNNHB	VDNNCAMRTGVVVH	Misc Kulakovskiy et al.(2013) CLOCK_HUMAN.H11MO.0.C	0.914	1.000
Clock M08760_2.00	Mus musculus	DBBBCAYKTGNNHB	VDNNCAMRTGVVVH	Misc Kulakovskiy et al.(2013) CLOCK_MOUSE.H11MO.0.C	0.914	1.000
Clock M09473_2.00	Mus musculus	CACGTGNN	NNCACGTG	Misc Heinz et al.(2010) Liver-Clock_GSE39860	0.914	1.000
CLOCK M09849_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CLOCK_Q6	0.914	1.000
CLOCK M04130_2.00	Homo sapiens	NRCRCRTGBH	DVCAYGYGYN	SELEX Yin et al.(2017) CLOCK_eDBD_Methyl-HT-SELEX	0.914	1.000
For this family, TFs with SR scores > 0.838* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSOPRP00000004875	bHLH	35	85	KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHK

Links
Other bHLH family TFs
Other *Ochotona princeps* TFs

77 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BBA_03180	Beauveria bassiana	BBA_03180	N
CFIO01_06836	Colletotrichum fioriniae	CFIO01_06836	N
Cob_11092	Colletotrichum orbiculare	Cob_11092	N
CSUB01_09286	Colletotrichum sublineola	CSUB01_09286	N
estExt_fgenesh1_pm.C_sca_2_chr3_3_00071	Nectria haematococca	estExt_fgenesh1_pm.C_sca_2_chr3_3_00071	N
FOXG_03505	Fusarium oxysporum	FOXG_03505	N
FVEG_02371	Fusarium verticillioides	FVEG_02371	N
GLRG_06557	Colletotrichum graminicola	GLRG_06557	N
MAC_06654	Metarhizium acridum	MAC_06654	N
MAJ_03430	Metarhizium majus	MAJ_03430	N
MAM_00381	Metarhizium album	MAM_00381	N
MBR_06926	Metarhizium brunneum	MBR_06926	N
MGU_05340	Metarhizium guizhouense	MGU_05340	N
NechaG103657	Fusarium solani	NechaG103657	N
TRIATDRAFT_219643	Trichoderma atroviride	TRIATDRAFT_219643	N
TRIREDRAFT_111013	Trichoderma reesei	TRIREDRAFT_111013	N
TRIVIDRAFT_115781	Trichoderma virens	TRIVIDRAFT_115781	N
VHEMI06572	Torrubiella hemipterigena	VHEMI06572	N
X797_008514	Metarhizium robertsii	X797_008514	N