Clock (Rattus norvegicus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSRNOG00000002175 T037165_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Clock
M01735_2.00 		Mus musculus
NNCAYRTGNN
NNCAYRTGNN		 PBM
Weirauch et al.(2014)
pTH5056 		0.914 1.000
CLOCK
M02789_2.00 		Homo sapiens
DACACGTGYH
DRCACGTGTH		 SELEX
Jolma et al.(2013)
CLOCK_1 		0.914 1.000
CLOCK
M04129_2.00 		Homo sapiens
NMCACGTGYN
NRCACGTGKN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_HT-SELEX 		0.914 1.000
CLOCK
M08728_2.00 		Homo sapiens
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_HUMAN.H11MO.0.C 		0.914 1.000
Clock
M08760_2.00 		Mus musculus
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_MOUSE.H11MO.0.C 		0.914 1.000
Clock
M09473_2.00 		Mus musculus
CACGTGNN
NNCACGTG		 Misc
Heinz et al.(2010)
Liver-Clock_GSE39860 		0.914 1.000
CLOCK
M09849_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CLOCK_Q6 		0.914 1.000
CLOCK
M04130_2.00 		Homo sapiens
NRCRCRTGBH
DVCAYGYGYN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000002976 bHLH 35 85
ENSRNOP00000002981 bHLH 35 85
ENSRNOP00000074670 bHLH 35 85

Links

Other bHLH family TFs
Other Rattus norvegicus TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_209430 Agaricus bisporus AGABI2DRAFT_209430 N
BN946_scf184962.g68 Trametes cinnabarina BN946_scf184962.g68 N
CC1G_11281 Coprinopsis cinerea CC1G_11281 N
CERSUDRAFT_137226 Ceriporiopsis subvermispora CERSUDRAFT_137226 N
CY34DRAFT_71692 Suillus luteus CY34DRAFT_71692 N
DICSQDRAFT_183662 Dichomitus squalens DICSQDRAFT_183662 N
fgenesh2_pg.C_scaffold_4000190 Heterobasidion annosum fgenesh2_pg.C_scaffold_4000190 N
FIBRA_07699 Fibroporia radiculosa FIBRA_07699 N
FOMPIDRAFT_1029514 Fomitopsis pinicola FOMPIDRAFT_1029514 N
GALMADRAFT_245970 Galerina marginata GALMADRAFT_245970 N
GLOTRDRAFT_118184 Gloeophyllum trabeum GLOTRDRAFT_118184 N
HETIRDRAFT_314002 Heterobasidion irregulare HETIRDRAFT_314002 N
HYDPIDRAFT_111320 Hydnomerulius pinastri HYDPIDRAFT_111320 N
JAAARDRAFT_207695 Jaapia argillacea JAAARDRAFT_207695 N
M404DRAFT_994800 Pisolithus tinctorius M404DRAFT_994800 N
M413DRAFT_445274 Hebeloma cylindrosporum M413DRAFT_445274 N
Moror_2913 Moniliophthora roreri Moror_2913 N
MPER_03826 Moniliophthora perniciosa MPER_03826 N
PAXRUDRAFT_826354 Paxillus rubicundulus PAXRUDRAFT_826354 N
PHACADRAFT_208262 Phanerochaete carnosa PHACADRAFT_208262 N
PHLGIDRAFT_100624 Phlebiopsis gigantea PHLGIDRAFT_100624 N
PILCRDRAFT_820042 Piloderma croceum PILCRDRAFT_820042 N
PISMIDRAFT_8428 Pisolithus microcarpus PISMIDRAFT_8428 N
PLEOSDRAFT_1098618 Pleurotus ostreatus PLEOSDRAFT_1098618 N
SCLCIDRAFT_784092 Scleroderma citrinum SCLCIDRAFT_784092 N
SERLA73DRAFT_72210 Serpula lacrymans SERLA73DRAFT_72210 N