PGSC0003DMG400014705 (Solanum tuberosum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 PGSC0003DMG400014705 T043460_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PIF4
M08046_2.00 		Arabidopsis thaliana
CACGTGSV
BSCACGTG		 ChIP-seq
Mathelier et al.(2014)
MA0561.1 		0.898 0.880
PIF5
M08047_2.00 		Arabidopsis thaliana
YCACRTGS
SCAYGTGR		 ChIP-seq
Mathelier et al.(2014)
MA0562.1 		0.886 0.860
PIF5
M09452_2.00 		Arabidopsis thaliana
NNBCAYGTGV
BCACRTGVNN		 Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062 		0.886 0.860
PIF1
M01703_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8733 		0.881 0.940
PIF1
M08404_2.00 		Arabidopsis thaliana
NCACGTGWSNYNHH
DDNRNSWCACGTGN		 ChIP-chip
Mathelier et al.(2014)
MA0552.1 		0.881 0.940
PIF1
M09783_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PIF1_01 		0.881 0.940
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.871 0.900
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.871 0.900
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.871 0.900
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.871 0.900
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.871 0.900
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.871 0.900
SPT
M01709_2.00 		Arabidopsis thaliana
NCACGTGSN
NSCACGTGN		 PBM
Weirauch et al.(2014)
pTH8111 		0.847 0.840
e_gw1.209.40.1
M01756_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8070 		0.842 0.620
LRL2
M06738_2.00 		Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH69_col_a 		0.842 0.580
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400038133 bHLH 274 323
PGSC0003DMT400038134 bHLH 310 359
PGSC0003DMT400038135 bHLH 310 359

Links

Other bHLH family TFs
Other Solanum tuberosum TFs

471 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANIA_01134 Aspergillus nidulans CADANIAG00001495 N
CERSUDRAFT_119740 Ceriporiopsis subvermispora CERSUDRAFT_119740 N
EPUS_00435 Endocarpon pusillum EPUS_00435 N
estExt_fgenesh3_kg.C_170048 Heterobasidion annosum estExt_fgenesh3_kg.C_170048 N
estExt_fgeneshMC_pg.C_50901 Mucor circinelloides estExt_fgeneshMC_pg.C_50901 N
estExt_fgeneshPB_pg.C_390043 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_390043 N
FIBRA_02145 Fibroporia radiculosa FIBRA_02145 N
GLOINDRAFT_184871 Rhizophagus irregularis GLOINDRAFT_184871 N
GLOTRDRAFT_117339 Gloeophyllum trabeum GLOTRDRAFT_117339 N
HETIRDRAFT_439816 Heterobasidion irregulare HETIRDRAFT_439816 N
HYDPIDRAFT_117261 Hydnomerulius pinastri HYDPIDRAFT_117261 N
KUCA_T00004588001 Kuraishia capsulata KUCA_T00004588001 N
PAXRUDRAFT_153943 Paxillus rubicundulus PAXRUDRAFT_153943 N
PV06_01512 Exophiala oligosperma PV06_01512 N
SCHCODRAFT_269951 Schizophyllum commune SCHCODRAFT_269951 N
SJAG_02048 Schizosaccharomyces japonicus SJAG_02048 N
WALSEDRAFT_28433 Wallemia sebi WALSEDRAFT_28433 N
WALSEDRAFT_58028 Wallemia sebi WALSEDRAFT_58028 N