hlh-1 (Caenorhabditis elegans)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 WBGene00001948 T046272_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
hlh-1
M00743_2.00		 Caenorhabditis elegans
NNCACGTGYB
VRCACGTGNN		 PBM
DeMasi et al.(2011)
HLH-1_L13R		 (Direct) (Direct)
hlh-1
M00744_2.00		 Caenorhabditis elegans
NACASVTGHN
NDCABSTGTN		 PBM
DeMasi et al.(2011)
HLH-1_L13T		 (Direct) (Direct)
hlh-1
M00745_2.00		 Caenorhabditis elegans
NACASCTGYN
NRCAGSTGTN		 PBM
DeMasi et al.(2011)
HLH-1_L13V		 (Direct) (Direct)
hlh-1
M00746_2.00		 Caenorhabditis elegans
RACAGCTGNN
NNCAGCTGTY		 PBM
DeMasi et al.(2011)
HLH-1		 (Direct) (Direct)
hlh-1
M00929_2.00		 Caenorhabditis elegans
GACAGCTG
CAGCTGTC		 PBM
Grove et al.(2009)
HLH1		 (Direct) (Direct)
hlh-1
M08063_2.00		 Caenorhabditis elegans
VAACAGYTGNY
RNCARCTGTTB		 ChIP-seq
Mathelier et al.(2014)
MA0545.1		 (Direct) (Direct)
hlh-1
M09481_2.00		 Caenorhabditis elegans
NNRNCARNTGNY
RNCANYTGNYNN		 Misc
Heinz et al.(2010)
cElegans-Embryo-HLH1_modEncode		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.838 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00743_2.00 bHLH 156 207
M00744_2.00 bHLH 156 207
M00745_2.00 bHLH 156 207
M00746_2.00 bHLH 156 207
M00929_2.00 bHLH 156 207

DNA Binding Domains

Protein ID Domain From To Sequence
B0304.1a bHLH 152 203
B0304.1b bHLH 156 207
B0304.1c bHLH 156 207

Links

Other bHLH family TFs
Other Caenorhabditis elegans TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action