Alligator_sinensis_CCG001917.1 (Alligator sinensis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Alligator_sinensis_CCG001917.1 T046625_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf21
M01746_2.00 		Mus musculus
RMCAKMTGK
MCAKMTGKY		 PBM
Weirauch et al.(2014)
pTH5087 		0.914 1.000
Tcf21
M02819_2.00 		Mus musculus
VNAACAGCTGTTVN
NBAACAGCTGTTNB		 SELEX
Jolma et al.(2013)
Tcf21_1 		0.914 1.000
TCF21
M04092_2.00 		Homo sapiens
BAACAGCTGBYN
NRVCAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_1 		0.914 1.000
TCF21
M04093_2.00 		Homo sapiens
NRCCATATGKYV
BRMCATATGGYN		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_2 		0.914 1.000
TCF21
M04094_2.00 		Homo sapiens
BAACAGCTGTYV
BRACAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_1 		0.914 1.000
TCF21
M04095_2.00 		Homo sapiens
BACCATATGKYV
BRMCATATGGTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_2 		0.914 1.000
Msc
M01730_2.00 		Mus musculus
NVCRKMYGBN
NVCRKMYGBN		 PBM
Weirauch et al.(2014)
pTH5112 		0.914 0.981
MSC
M02801_2.00 		Homo sapiens
AACAGCTGTT
AACAGCTGTT		 SELEX
Jolma et al.(2013)
MSC_1 		0.914 0.981
MSC
M04183_2.00 		Homo sapiens
NRMCAGMTGBYN
NRVCAKCTGKYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_1 		0.914 0.981
MSC
M04184_2.00 		Homo sapiens
NRVCAYVTGBYN
NRVCABRTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_2 		0.914 0.981
MSC
M04187_2.00 		Homo sapiens
NRMCAGCTGBYV
BRVCAGCTGKYN		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_1 		0.914 0.981
MSC
M04188_2.00 		Homo sapiens
BRMCATATGKYN
NRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_2 		0.914 0.981
MSC
M04185_2.00 		Homo sapiens
NRVCAGCTGBBN
NVVCAGCTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_1 		0.914 0.981
MSC
M04186_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_2 		0.914 0.981
MSC
M04189_2.00 		Homo sapiens
BRACAGCTGTYV
BRACAGCTGTYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_1 		0.914 0.981
MSC
M04190_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_2 		0.914 0.981
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG001917.1 bHLH 80 132

Links

Other bHLH family TFs
Other Alligator sinensis TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000019617 Ailuropoda melanoleuca ENSAMEG00000019617 N 0.000
ENSMPUG00000020053 Mustela putorius furo ENSMPUG00000020053 N 0.000
ENSNLEG00000018448 Nomascus leucogenys ENSNLEG00000018448 N 0.000
ENSOARG00000001631 Ovis aries ENSOARG00000001631 N 0.000
ENSP00000268674 Macaca fascicularis ENSP00000268674 N 0.000
ENSPPYG00000007039 Pongo abelii ENSPPYG00000007039 N 0.000
ENSSHAG00000016162 Sarcophilus harrisii ENSSHAG00000016162 N 0.000
ENSSSCG00000026262 Sus scrofa ENSSSCG00000026262 N 0.000
ENSSTOG00000013125 Ictidomys tridecemlineatus ENSSTOG00000013125 N 0.000
TIGD7 Homo sapiens ENSG00000140993 N 0.000
TIGD7 Gorilla gorilla ENSGGOG00000010475 N 0.000
TIGD7 Monodelphis domestica ENSMODG00000016431 N 0.000
TIGD7 Felis catus ENSFCAG00000006100 N 0.000
TIGD7 Equus caballus ENSECAG00000004461 N 0.000
TIGD7 Callithrix jacchus ENSCJAG00000019621 N 0.000
TIGD7 Otolemur garnettii ENSOGAG00000015891 N 0.000
TIGD7 Procavia capensis ENSPCAG00000003971 N 0.000
TIGD7 Pan troglodytes ENSPTRG00000007693 N 0.000
TIGD7 Pteropus vampyrus ENSPVAG00000001370 N 0.000
TIGD7 Sorex araneus ENSSARG00000000233 N 0.000
TIGD7 Canis familiaris ENSCAFG00000032077 N 0.000