Cmyd_10020160 (Chelonia mydas)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cmyd_10020160 T047120_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.914 1.000
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.914 1.000
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.914 1.000
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.914 1.000
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.914 1.000
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.914 1.000
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.914 1.000
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.914 1.000
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.912 0.962
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.912 0.962
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.912 0.962
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.912 0.962
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.912 0.962
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.912 0.962
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.912 0.962
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.912 0.962
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.912 0.962
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.912 0.962
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.912 0.962
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.912 0.962
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.912 0.962
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.912 0.962
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.912 0.885
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.912 0.885
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.912 0.885
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.884 0.923
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.884 0.923
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.884 0.923
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.884 0.885
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.884 0.885
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.884 0.885
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.884 0.885
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.884 0.885
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.884 0.885
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.884 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10020160 bHLH 386 439

Links

Other bHLH family TFs
Other Chelonia mydas TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1Q1_01999 Trichosporon asahii A1Q1_01999 N 0.000
AGABI2DRAFT_197789 Agaricus bisporus AGABI2DRAFT_197789 N 0.000
BN946_scf185001.g47 Trametes cinnabarina BN946_scf185001.g47 N 0.000
BOTBODRAFT_112907 Botryobasidium botryosum BOTBODRAFT_112907 N 0.000
BOTBODRAFT_27262 Botryobasidium botryosum BOTBODRAFT_27262 N 0.000
CC1G_03731 Coprinopsis cinerea CC1G_03731 N 0.000
CC1G_08665 Coprinopsis cinerea CC1G_08665 N 0.000
CERSUDRAFT_109864 Ceriporiopsis subvermispora CERSUDRAFT_109864 N 0.000
CERSUDRAFT_114830 Ceriporiopsis subvermispora CERSUDRAFT_114830 N 0.000
CERSUDRAFT_115065 Ceriporiopsis subvermispora CERSUDRAFT_115065 N 0.000
CNG02270 Cryptococcus neoformans CNG02270 N 0.000
CY34DRAFT_31562 Suillus luteus CY34DRAFT_31562 N 0.000
CY34DRAFT_809277 Suillus luteus CY34DRAFT_809277 N 0.000
DICSQDRAFT_14849 Dichomitus squalens DICSQDRAFT_14849 N 0.000
estExt_fgenesh3_kg.C_80174 Heterobasidion annosum estExt_fgenesh3_kg.C_80174 N 0.000
estExt_fgeneshPB_pg.C_140262 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_140262 N 0.000
e_gw1.12.266.1 Mucor circinelloides e_gw1.12.266.1 N 0.000
e_gw1.7.560.1 Sporobolomyces roseus e_gw1.7.560.1 N 0.000
e_gww2.5.562.1 Phanerochaete chrysosporium e_gww2.5.562.1 N 0.000
e_gww2.7.722.1 Phanerochaete chrysosporium e_gww2.7.722.1 N 0.000
FIBRA_07597 Fibroporia radiculosa FIBRA_07597 N 0.000
FOMPIDRAFT_1033652 Fomitopsis pinicola FOMPIDRAFT_1033652 N 0.000
FOMPIDRAFT_1085863 Fomitopsis pinicola FOMPIDRAFT_1085863 N 0.000
FOMPIDRAFT_1145789 Fomitopsis pinicola FOMPIDRAFT_1145789 N 0.000
FOMPIDRAFT_1161920 Fomitopsis pinicola FOMPIDRAFT_1161920 N 0.000
GALMADRAFT_233958 Galerina marginata GALMADRAFT_233958 N 0.000
GALMADRAFT_246744 Galerina marginata GALMADRAFT_246744 N 0.000
GLOTRDRAFT_112363 Gloeophyllum trabeum GLOTRDRAFT_112363 N 0.000
GLOTRDRAFT_26554 Gloeophyllum trabeum GLOTRDRAFT_26554 N 0.000
gw1.1.1202.1 Heterobasidion annosum gw1.1.1202.1 N 0.000
gw1.8.218.1 Tremella mesenterica gw1.8.218.1 N 0.000
GYMLUDRAFT_174618 Gymnopus luxurians GYMLUDRAFT_174618 N 0.000
HETIRDRAFT_147959 Heterobasidion irregulare HETIRDRAFT_147959 N 0.000
HETIRDRAFT_181137 Heterobasidion irregulare HETIRDRAFT_181137 N 0.000
HYDPIDRAFT_99864 Hydnomerulius pinastri HYDPIDRAFT_99864 N 0.000
JAAARDRAFT_209121 Jaapia argillacea JAAARDRAFT_209121 N 0.000
JAAARDRAFT_288915 Jaapia argillacea JAAARDRAFT_288915 N 0.000
K443DRAFT_104168 Laccaria amethystina K443DRAFT_104168 N 0.000
K443DRAFT_676063 Laccaria amethystina K443DRAFT_676063 N 0.000
L804_03638 Cryptococcus gattii L804_03638 N 0.000
LACBIDRAFT_247901 Laccaria bicolor LACBIDRAFT_247901 N 0.000
LACBIDRAFT_300881 Laccaria bicolor LACBIDRAFT_300881 N 0.000
M378DRAFT_34186 Amanita muscaria M378DRAFT_34186 N 0.000
M404DRAFT_1002106 Pisolithus tinctorius M404DRAFT_1002106 N 0.000
M404DRAFT_998133 Pisolithus tinctorius M404DRAFT_998133 N 0.000
M413DRAFT_13613 Hebeloma cylindrosporum M413DRAFT_13613 N 0.000
M413DRAFT_216932 Hebeloma cylindrosporum M413DRAFT_216932 N 0.000
M413DRAFT_237712 Hebeloma cylindrosporum M413DRAFT_237712 N 0.000
Moror_1174 Moniliophthora roreri Moror_1174 N 0.000
Moror_346 Moniliophthora roreri Moror_346 N 0.000
Moror_572 Moniliophthora roreri Moror_572 N 0.000
PAXRUDRAFT_15625 Paxillus rubicundulus PAXRUDRAFT_15625 N 0.000
PAXRUDRAFT_33927 Paxillus rubicundulus PAXRUDRAFT_33927 N 0.000
PHACADRAFT_254049 Phanerochaete carnosa PHACADRAFT_254049 N 0.000
PHACADRAFT_83199 Phanerochaete carnosa PHACADRAFT_83199 N 0.000
PHLGIDRAFT_16085 Phlebiopsis gigantea PHLGIDRAFT_16085 N 0.000
PHLGIDRAFT_451232 Phlebiopsis gigantea PHLGIDRAFT_451232 N 0.000
PIIN_04027 Piriformospora indica PIIN_04027 N 0.000
PILCRDRAFT_122351 Piloderma croceum PILCRDRAFT_122351 N 0.000
PISMIDRAFT_283095 Pisolithus microcarpus PISMIDRAFT_283095 N 0.000
PLEOSDRAFT_1060467 Pleurotus ostreatus PLEOSDRAFT_1060467 N 0.000
POSPLDRAFT_135054 Postia placenta POSPLDRAFT_135054 N 0.000
POSPLDRAFT_135057 Postia placenta POSPLDRAFT_135057 N 0.000
POSPLDRAFT_135062 Postia placenta POSPLDRAFT_135062 N 0.000
RHTO_01077 Rhodosporidium toruloides RHTO_01077 N 0.000
SCHCODRAFT_269947 Schizophyllum commune SCHCODRAFT_269947 N 0.000
SCHCODRAFT_86194 Schizophyllum commune SCHCODRAFT_86194 N 0.000
SCLCIDRAFT_1225180 Scleroderma citrinum SCLCIDRAFT_1225180 N 0.000
SCLCIDRAFT_36428 Scleroderma citrinum SCLCIDRAFT_36428 N 0.000
SERLA73DRAFT_176212 Serpula lacrymans SERLA73DRAFT_176212 N 0.000
SERLA73DRAFT_66208 Serpula lacrymans SERLA73DRAFT_66208 N 0.000
V565_046740 Rhizoctonia solani V565_046740 N 0.000