fgenesh2_pg.scaffold_201000028 (Branchiostoma floridae)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 fgenesh2_pg.scaffold_201000028 T048575_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf21
M01746_2.00 		Mus musculus
RMCAKMTGK
MCAKMTGKY		 PBM
Weirauch et al.(2014)
pTH5087 		0.862 0.846
Tcf21
M02819_2.00 		Mus musculus
VNAACAGCTGTTVN
NBAACAGCTGTTNB		 SELEX
Jolma et al.(2013)
Tcf21_1 		0.862 0.846
TCF21
M04092_2.00 		Homo sapiens
BAACAGCTGBYN
NRVCAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_1 		0.862 0.846
TCF21
M04093_2.00 		Homo sapiens
NRCCATATGKYV
BRMCATATGGYN		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_2 		0.862 0.846
TCF21
M04094_2.00 		Homo sapiens
BAACAGCTGTYV
BRACAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_1 		0.862 0.846
TCF21
M04095_2.00 		Homo sapiens
BACCATATGKYV
BRMCATATGGTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_2 		0.862 0.846
Msc
M01730_2.00 		Mus musculus
NVCRKMYGBN
NVCRKMYGBN		 PBM
Weirauch et al.(2014)
pTH5112 		0.862 0.827
MSC
M02801_2.00 		Homo sapiens
AACAGCTGTT
AACAGCTGTT		 SELEX
Jolma et al.(2013)
MSC_1 		0.862 0.827
MSC
M04183_2.00 		Homo sapiens
NRMCAGMTGBYN
NRVCAKCTGKYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_1 		0.862 0.827
MSC
M04184_2.00 		Homo sapiens
NRVCAYVTGBYN
NRVCABRTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_2 		0.862 0.827
MSC
M04187_2.00 		Homo sapiens
NRMCAGCTGBYV
BRVCAGCTGKYN		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_1 		0.862 0.827
MSC
M04188_2.00 		Homo sapiens
BRMCATATGKYN
NRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_2 		0.862 0.827
MSC
M04185_2.00 		Homo sapiens
NRVCAGCTGBBN
NVVCAGCTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_1 		0.862 0.827
MSC
M04186_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_2 		0.862 0.827
MSC
M04189_2.00 		Homo sapiens
BRACAGCTGTYV
BRACAGCTGTYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_1 		0.862 0.827
MSC
M04190_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_2 		0.862 0.827
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_201000028 bHLH 71 123

Links

Other bHLH family TFs
Other Branchiostoma floridae TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA002833 Oryza indica BGIOSGA002833 N
BRADI2G03830 Brachypodium distachyon BRADI2G03830 I
BRADI2G34600 Brachypodium distachyon BRADI2G34600 N
F775_00759 Aegilops tauschii F775_00759 N
F775_01873 Aegilops tauschii F775_01873 N
GRMZM2G088443 Zea mays GRMZM2G088443 I
GRMZM2G369629 Zea mays GRMZM2G369629 N
GSMUA_Achr5G29390_001 Musa acuminata GSMUA_Achr5G29390_001 N
LPERR01G03590 Leersia perrieri LPERR01G03590 I
LPERR05G03980 Leersia perrieri LPERR05G03980 N
MLOC_69121 Hordeum vulgare MLOC_69121 N
OB01G13800 Oryza brachyantha OB01G13800 N
OBART01G03950 Oryza barthii OBART01G03950 N
OBART05G04450 Oryza barthii OBART05G04450 N
OGLUM01G04250 Oryza glumaepatula OGLUM01G04250 N
OGLUM05G04370 Oryza glumaepatula OGLUM05G04370 N
OLONG_015419 Oryza longistaminata OLONG_015419 N
OMERI01G03850 Oryza meridionalis OMERI01G03850 N
OMERI05G04410 Oryza meridionalis OMERI05G04410 N
ONIVA01G04390 Oryza nivara ONIVA01G04390 N
ONIVA05G04820 Oryza nivara ONIVA05G04820 N
OPUNC01G03610 Oryza punctata OPUNC01G03610 N
OPUNC05G04080 Oryza punctata OPUNC05G04080 N
ORGLA01G0034700 Oryza glaberrima ORGLA01G0034700 N
ORGLA05G0041400 Oryza glaberrima ORGLA05G0041400 N
ORUFI01G04050 Oryza rufipogon ORUFI01G04050 N
ORUFI05G04670 Oryza rufipogon ORUFI05G04670 N
OS05G0163900 Oryza sativa OS05G0163900 N
Pavir.Ca01107 Panicum virgatum Pavir.Ca01107 I
Pavir.Ea00439 Panicum virgatum Pavir.Ea00439 I
Pavir.J32610 Panicum virgatum Pavir.J32610 N
PDK_20s1551661g004 Phoenix dactylifera PDK_20s1551661g004 N
Sb03g005250 Sorghum bicolor Sb03g005250 N
Sb09g004820 Sorghum bicolor Sb09g004820 N
Si002655m.g Setaria italica Si002655m.g I
Si012213m.g Setaria italica Si012213m.g N
TRAES3BF130100030CFD_g Triticum aestivum TRAES3BF130100030CFD_g N
Traes_1AS_96F0745A2 Triticum aestivum Traes_1AS_96F0745A2 N
Traes_1BS_1F372BED3 Triticum aestivum Traes_1BS_1F372BED3 N
Traes_1DS_CD79239C8 Triticum aestivum Traes_1DS_CD79239C8 N
Traes_3B_2DF1A6E5B Triticum aestivum Traes_3B_2DF1A6E5B N
TRIUR3_07421 Triticum urartu TRIUR3_07421 N
TRIUR3_12818 Triticum urartu TRIUR3_12818 N
TRIUR3_21807 Triticum urartu TRIUR3_21807 N