gw.912.11.1 (Branchiostoma floridae)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 gw.912.11.1 T048697_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf21
M01746_2.00 		Mus musculus
RMCAKMTGK
MCAKMTGKY		 PBM
Weirauch et al.(2014)
pTH5087 		0.862 0.846
Tcf21
M02819_2.00 		Mus musculus
VNAACAGCTGTTVN
NBAACAGCTGTTNB		 SELEX
Jolma et al.(2013)
Tcf21_1 		0.862 0.846
TCF21
M04092_2.00 		Homo sapiens
BAACAGCTGBYN
NRVCAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_1 		0.862 0.846
TCF21
M04093_2.00 		Homo sapiens
NRCCATATGKYV
BRMCATATGGYN		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_2 		0.862 0.846
TCF21
M04094_2.00 		Homo sapiens
BAACAGCTGTYV
BRACAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_1 		0.862 0.846
TCF21
M04095_2.00 		Homo sapiens
BACCATATGKYV
BRMCATATGGTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_2 		0.862 0.846
Msc
M01730_2.00 		Mus musculus
NVCRKMYGBN
NVCRKMYGBN		 PBM
Weirauch et al.(2014)
pTH5112 		0.862 0.827
MSC
M02801_2.00 		Homo sapiens
AACAGCTGTT
AACAGCTGTT		 SELEX
Jolma et al.(2013)
MSC_1 		0.862 0.827
MSC
M04183_2.00 		Homo sapiens
NRMCAGMTGBYN
NRVCAKCTGKYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_1 		0.862 0.827
MSC
M04184_2.00 		Homo sapiens
NRVCAYVTGBYN
NRVCABRTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_2 		0.862 0.827
MSC
M04187_2.00 		Homo sapiens
NRMCAGCTGBYV
BRVCAGCTGKYN		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_1 		0.862 0.827
MSC
M04188_2.00 		Homo sapiens
BRMCATATGKYN
NRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_2 		0.862 0.827
MSC
M04185_2.00 		Homo sapiens
NRVCAGCTGBBN
NVVCAGCTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_1 		0.862 0.827
MSC
M04186_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_2 		0.862 0.827
MSC
M04189_2.00 		Homo sapiens
BRACAGCTGTYV
BRACAGCTGTYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_1 		0.862 0.827
MSC
M04190_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_2 		0.862 0.827
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw.912.11.1 bHLH 71 123

Links

Other bHLH family TFs
Other Branchiostoma floridae TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL010031 Aedes aegypti AAEL010031 I 0.877
AALB007560 Anopheles albimanus AALB007560 I 0.877
AALB007822 Anopheles albimanus AALB007822 I 0.877
Aan_R009769 Calypte anna Aan_R009769 I 0.862
AARA007787 Anopheles arabiensis AARA007787 I 0.877
AATE012411 Anopheles atroparvus AATE012411 I 0.877
ACEP13483 Atta cephalotes ACEP13483 I 0.844
ACHR000018 Anopheles christyi ACHR000018 I 0.877
ACOM025280 Anopheles coluzzii ACOM025280 I 0.877
ACUA017871 Anopheles culicifacies ACUA017871 I 0.877
ACYPI002601 Acyrthosiphon pisum ACYPI002601 I 0.903
ADIR008037 Anopheles dirus ADIR008037 I 0.877
AEPI000467 Anopheles epiroticus AEPI000467 I 0.877
Afo_R014913 Aptenodytes forsteri Afo_R014913 I 0.862
AFUN008043 Anopheles funestus AFUN008043 I 0.877
AGAP007124 Anopheles gambiae AGAP007124 I 0.877
Alligator_sinensis_CCG001917.1 Alligator sinensis Alligator_sinensis_CCG001917.1 I 0.862
AMAM016192 Anopheles maculatus AMAM016192 I 0.877
AMEC000644 Anopheles melas AMEC000644 I 0.877
AMEM011707 Anopheles merus AMEM011707 I 0.877
AMIN011264 Anopheles minimus AMIN011264 I 0.877
AQUA002051 Anopheles quadriannulatus AQUA002051 I 0.877
ASTEI06898 Anopheles stephensi ASTEI06898 I 0.877
BGIBMGA012033 Bombyx mori BGIBMGA012033 I 0.879
BGLB011346 Biomphalaria glabrata BGLB011346 I 0.862
Brh_R005605 Buceros rhinoceros Brh_R005605 I 0.862
CapteG80741 Capitella teleta CapteG80741 I 0.890
Cflo_04912--XP_001121050.1_APIME Camponotus floridanus Cflo_04912--XP_001121050.1_APIME I 0.862
CGI_10026944 Crassostrea gigas CGI_10026944 I 0.890
CLEC012607 Cimex lectularius CLEC012607 I 0.859
CPIJ016930 Culex quinquefasciatus CPIJ016930 I 0.877
CpipJ_CPIJ016930 Culex pipiens CpipJ_CPIJ016930 I 0.877
DAPPUDRAFT_37461 Daphnia pulex DAPPUDRAFT_37461 I 0.859
ECANG7_04949 Echinococcus canadensis ECANG7_04949 I 0.842
EmuJ_000624300 Echinococcus multilocularis EmuJ_000624300 I 0.842
ENSAMEG00000005942 Ailuropoda melanoleuca ENSAMEG00000005942 I 0.862
ENSAMEG00000015953 Ailuropoda melanoleuca ENSAMEG00000015953 I 0.862
ENSAMXG00000004351 Astyanax mexicanus ENSAMXG00000004351 I 0.879
ENSAPLG00000008024 Anas platyrhynchos ENSAPLG00000008024 I 0.862
ENSBTAP00000044112-D1 Bos grunniens ENSBTAP00000044112-D1 I 0.862
ENSBTAP00000052463-D1 Bos grunniens ENSBTAP00000052463-D1 I 0.862
ENSCPOG00000004726 Cavia porcellus ENSCPOG00000004726 I 0.862
ENSCSAG00000013709 Chlorocebus sabaeus ENSCSAG00000013709 I 0.862
ENSCSAG00000016705 Chlorocebus sabaeus ENSCSAG00000016705 I 0.862
ENSFALG00000008455 Ficedula albicollis ENSFALG00000008455 I 0.862
ENSFALG00000011861 Ficedula albicollis ENSFALG00000011861 I 0.862
ENSGALG00000019470 Gallus gallus ENSGALG00000019470 I 0.862
ENSGMOG00000019481 Gadus morhua ENSGMOG00000019481 I 0.890
ENSLACG00000005024 Latimeria chalumnae ENSLACG00000005024 I 0.862
ENSLACG00000014348 Latimeria chalumnae ENSLACG00000014348 I 0.842
ENSLOCG00000003912 Lepisosteus oculatus ENSLOCG00000003912 I 0.862
ENSLOCG00000016232 Lepisosteus oculatus ENSLOCG00000016232 I 0.862
ENSMEUG00000005491 Macropus eugenii ENSMEUG00000005491 I 0.862
ENSMICG00000014144 Microcebus murinus ENSMICG00000014144 I 0.862
ENSMPUG00000010593 Mustela putorius furo ENSMPUG00000010593 I 0.862
ENSMPUG00000014798 Mustela putorius furo ENSMPUG00000014798 I 0.862
ENSNLEG00000011452 Nomascus leucogenys ENSNLEG00000011452 I 0.862
ENSNLEG00000014647 Nomascus leucogenys ENSNLEG00000014647 I 0.862
ENSOARG00000004844 Ovis aries ENSOARG00000004844 I 0.862
ENSOARG00000014623 Ovis aries ENSOARG00000014623 I 0.862
ENSONIG00000000446 Oreochromis niloticus ENSONIG00000000446 I 0.862
ENSONIG00000014278 Oreochromis niloticus ENSONIG00000014278 I 0.890
ENSP00000321445 Macaca fascicularis ENSP00000321445 I 0.862
ENSP00000356857 Macaca fascicularis ENSP00000356857 I 0.862
ENSPANG00000022301 Papio anubis ENSPANG00000022301 I 0.862
ENSPANG00000024238 Papio anubis ENSPANG00000024238 I 0.862
ENSPCAG00000006459 Procavia capensis ENSPCAG00000006459 I 0.862
ENSPFOG00000010821 Poecilia formosa ENSPFOG00000010821 I 0.862
ENSPFOG00000020725 Poecilia formosa ENSPFOG00000020725 I 0.890
ENSPMAG00000000379 Petromyzon marinus ENSPMAG00000000379 I 0.890
ENSPPYG00000017022 Pongo abelii ENSPPYG00000017022 I 0.862
ENSPPYG00000018665 Pongo abelii ENSPPYG00000018665 I 0.862
ENSPSIG00000003604 Pelodiscus sinensis ENSPSIG00000003604 I 0.862
ENSSHAG00000002801 Sarcophilus harrisii ENSSHAG00000002801 I 0.862
ENSSHAG00000004870 Sarcophilus harrisii ENSSHAG00000004870 I 0.862
ENSSSCG00000004174 Sus scrofa ENSSSCG00000004174 I 0.862
ENSSTOG00000023733 Ictidomys tridecemlineatus ENSSTOG00000023733 I 0.862
ENSSTOG00000024832 Ictidomys tridecemlineatus ENSSTOG00000024832 I 0.862
ENSXMAG00000004322 Xiphophorus maculatus ENSXMAG00000004322 I 0.862
ENSXMAG00000010332 Xiphophorus maculatus ENSXMAG00000010332 I 0.890
fgenesh2_pg.scaffold_201000028 Branchiostoma floridae fgenesh2_pg.scaffold_201000028 I 0.914
GB42177 Apis mellifera GB42177 I 0.879
Gfo_R006439 Geospiza fortis Gfo_R006439 I 0.862
HelroG188977 Helobdella robusta HelroG188977 I 0.866
Hsal_01862--XP_001122645.1_APIME Harpegnathos saltator Hsal_01862--XP_001122645.1_APIME I 0.851
ISCW019706 Ixodes scapularis ISCW019706 I 0.851
KGM_20305 Danaus plexippus KGM_20305 I 0.879
L798_06836 Zootermopsis nevadensis L798_06836 I 0.879
LDEC005027 Leptinotarsa decemlineata LDEC005027 I 0.879
LotgiG99224 Lottia gigantea LotgiG99224 I 0.890
MCOS_0000023201 Mesocestoides corti MCOS_0000023201 I 0.842
MSC Anolis carolinensis ENSACAG00000014585 I 0.862
MSC Bos taurus ENSBTAG00000005404 I 0.862
MSC Canis familiaris ENSCAFG00000007923 I 0.862
MSC Callithrix jacchus ENSCJAG00000007766 I 0.862
msc Danio rerio ENSDARG00000045353 I 0.890
MSC Dasypus novemcinctus ENSDNOG00000019019 I 0.862
MSC Equus caballus ENSECAG00000008333 I 0.862
MSC Erinaceus europaeus ENSEEUG00000005021 I 0.862
MSC Homo sapiens ENSG00000178860 D 0.862
msc Gasterosteus aculeatus ENSGACG00000002802 I 0.890
MSC Gorilla gorilla ENSGGOG00000009955 I 0.862
MSC Loxodonta africana ENSLAFG00000002649 I 0.862
MSC Myotis lucifugus ENSMLUG00000008572 I 0.862
MSC Macaca mulatta ENSMMUG00000000947 I 0.862
MSC Monodelphis domestica ENSMODG00000007225 I 0.862
Msc Mus musculus ENSMUSG00000025930 D 0.862
MSC Oryctolagus cuniculus ENSOCUG00000007208 I 0.862
MSC Otolemur garnettii ENSOGAG00000013827 I 0.862
msc Oryzias latipes ENSORLG00000008030 I 0.890
MSC Procavia capensis ENSPCAG00000004330 I 0.862
MSC Pan troglodytes ENSPTRG00000020339 I 0.862
MSC Pteropus vampyrus ENSPVAG00000009083 I 0.862
Msc Rattus norvegicus ENSRNOG00000007540 I 0.862
MSC Sus scrofa ENSSSCG00000006187 I 0.862
MSC Tupaia belangeri ENSTBEG00000014659 I 0.862
MSC Taeniopygia guttata ENSTGUG00000011502 I 0.862
msc Tetraodon nigroviridis ENSTNIG00000008188 I 0.890
msc Takifugu rubripes ENSTRUG00000012425 I 0.890
MSC Tursiops truncatus ENSTTRG00000017260 I 0.862
MSC Vicugna pacos ENSVPAG00000000378 I 0.862
msc Xenopus tropicalis XB-GENE-978233 I 0.862
Myotis_brandtii_TCF21_10035690 Myotis brandtii Myotis_brandtii_TCF21_10035690 I 0.862
Ogr02938 Ophisaurus gracilis Ogr02938 I 0.862
PHUM294350 Pediculus humanus PHUM294350 I 0.844
Sakowv30031408m.g Saccoglossus kowalevskii Sakowv30031408m.g I 0.879
SINV12414 Solenopsis invicta SINV12414 I 0.844
SMAR006929 Strigamia maritima SMAR006929 I 0.879
SPU_012008 Strongylocentrotus purpuratus SPU_012008 I 0.862
TASK_0000025401 Taenia asiatica TASK_0000025401 I 0.842
TC002349 Tribolium castaneum TC002349 I 0.879
TCF21 Anolis carolinensis ENSACAG00000010325 I 0.862
TCF21 Bos taurus ENSBTAG00000021827 I 0.862
TCF21 Canis familiaris ENSCAFG00000000205 I 0.862
TCF21 Callithrix jacchus ENSCJAG00000002811 I 0.862
TCF21 Cavia porcellus ENSCPOG00000024201 I 0.862
tcf21 Danio rerio ENSDARG00000036869 I 0.862
TCF21 Dasypus novemcinctus ENSDNOG00000042846 I 0.862
TCF21 Equus caballus ENSECAG00000019197 I 0.862
TCF21 Echinops telfairi ENSETEG00000012492 I 0.862
TCF21 Felis catus ENSFCAG00000031261 I 0.862
TCF21 Homo sapiens ENSG00000118526 D 0.862
tcf21 Gasterosteus aculeatus ENSGACG00000010957 I 0.890
TCF21 Gallus gallus ENSGALG00000029024 I 0.862
TCF21 Gorilla gorilla ENSGGOG00000005460 I 0.862
TCF21 Loxodonta africana ENSLAFG00000009507 I 0.862
TCF21 Meleagris gallopavo ENSMGAG00000013117 I 0.862
TCF21 Myotis lucifugus ENSMLUG00000009194 I 0.862
TCF21 Macaca mulatta ENSMMUG00000002871 I 0.862
TCF21 Monodelphis domestica ENSMODG00000017516 I 0.862
Tcf21 Mus musculus ENSMUSG00000045680 D 0.862
TCF21 Ornithorhynchus anatinus ENSOANG00000013098 I 0.862
TCF21 Oryctolagus cuniculus ENSOCUG00000017761 I 0.862
TCF21 Otolemur garnettii ENSOGAG00000034073 I 0.862
tcf21 Oryzias latipes ENSORLG00000016491 I 0.862
TCF21 Pan troglodytes ENSPTRG00000018622 I 0.862
TCF21 Pteropus vampyrus ENSPVAG00000009085 I 0.862
Tcf21 Rattus norvegicus ENSRNOG00000016700 I 0.862
TCF21 Taeniopygia guttata ENSTGUG00000011548 I 0.862
tcf21 Tetraodon nigroviridis ENSTNIG00000016326 I 0.862
tcf21 Takifugu rubripes ENSTRUG00000003919 I 0.862
TCF21 Tursiops truncatus ENSTTRG00000009645 I 0.862
TCF21 Vicugna pacos ENSVPAG00000006271 I 0.862
tcf21 Xenopus tropicalis XB-GENE-484805 I 0.862
tcf21.L Xenopus laevis XB-GENE-484809 I 0.862
TsM_000945000 Taenia solium TsM_000945000 I 0.842