Ciclev10011214m.g (Citrus clementina)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Ciclev10011214m.g T049493_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK18474.1
M01127_2.00 		Cannabis sativa
NRCACGTGCN
NGCACGTGYN		 PBM
Lambert et al.(2019)
pTH10273 		0.890 0.979
PK18474.1
M01768_2.00 		Cannabis sativa
NCACGWK
MWCGTGN		 PBM
Weirauch et al.(2014)
pTH9589 		0.890 0.979
MYC2
M01699_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8083 		0.890 0.958
MYC3
M01712_2.00 		Arabidopsis thaliana
MWYGTGNNNN
NNNNCACRWK		 PBM
Weirauch et al.(2014)
pTH8854 		0.890 0.958
MYC4
M01707_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8260 		0.890 0.938
OS01G0235700
M09894_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BHLH66_01 		0.890 0.896
BHLH13
M01698_2.00 		Arabidopsis thaliana
MCACGTGV
BCACGTGK		 PBM
Weirauch et al.(2014)
pTH7565 		0.879 0.917
PK09702.1
M01124_2.00 		Cannabis sativa
GCACGTGV
BCACGTGC		 PBM
Lambert et al.(2019)
pTH11374 		0.864 0.667
AT2G22750
M06730_2.00 		Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK		 Dap-seq
OMalley et al.(2016)
bHLH18_col_a 		0.858 0.604
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10011214m bHLH 504 551

Links

Other bHLH family TFs
Other Citrus clementina TFs

570 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009070 Calypte anna Aan_R009070 I
Aan_R013218 Calypte anna Aan_R013218 I
Afo_R007963 Aptenodytes forsteri Afo_R007963 I
Alligator_sinensis_CCG007971.1 Alligator sinensis Alligator_sinensis_CCG007971.1 I
Alligator_sinensis_CCG012315.1 Alligator sinensis Alligator_sinensis_CCG012315.1 I
Cmyd_10007930 Chelonia mydas Cmyd_10007930 I
Cmyd_10008393 Chelonia mydas Cmyd_10008393 I
ENSAMEG00000005129 Ailuropoda melanoleuca ENSAMEG00000005129 I
ENSAMEG00000015506 Ailuropoda melanoleuca ENSAMEG00000015506 I
ENSAMXG00000008028 Astyanax mexicanus ENSAMXG00000008028 I
ENSAMXG00000009016 Astyanax mexicanus ENSAMXG00000009016 I
ENSAPLG00000003145 Anas platyrhynchos ENSAPLG00000003145 I
ENSBTAP00000018956-D1 Bos grunniens ENSBTAP00000018956-D1 I
ENSCJAG00000002378 Callithrix jacchus ENSCJAG00000002378 I
ENSCSAG00000005734 Chlorocebus sabaeus ENSCSAG00000005734 I
ENSCSAG00000008412 Chlorocebus sabaeus ENSCSAG00000008412 I
ENSFALG00000011811 Ficedula albicollis ENSFALG00000011811 I
ENSFALG00000013762 Ficedula albicollis ENSFALG00000013762 I
ENSGALG00000011916 Gallus gallus ENSGALG00000011916 I
ENSGMOG00000006325 Gadus morhua ENSGMOG00000006325 I
ENSLACG00000013149 Latimeria chalumnae ENSLACG00000013149 I
ENSLOCG00000008766 Lepisosteus oculatus ENSLOCG00000008766 I
ENSMEUG00000001306 Macropus eugenii ENSMEUG00000001306 I
ENSMEUG00000011986 Macropus eugenii ENSMEUG00000011986 I
ENSMPUG00000000024 Mustela putorius furo ENSMPUG00000000024 I
ENSMPUG00000016372 Mustela putorius furo ENSMPUG00000016372 I
ENSNLEG00000013625 Nomascus leucogenys ENSNLEG00000013625 I
ENSOARG00000001504 Ovis aries ENSOARG00000001504 I
ENSOARG00000018717 Ovis aries ENSOARG00000018717 I
ENSONIG00000002304 Oreochromis niloticus ENSONIG00000002304 I
ENSONIG00000008375 Oreochromis niloticus ENSONIG00000008375 I
ENSP00000348069 Macaca fascicularis ENSP00000348069 I
ENSP00000354476 Macaca fascicularis ENSP00000354476 I
ENSPANG00000008691 Papio anubis ENSPANG00000008691 I
ENSPANG00000023675 Papio anubis ENSPANG00000023675 I
ENSPFOG00000000475 Poecilia formosa ENSPFOG00000000475 I
ENSPFOG00000010306 Poecilia formosa ENSPFOG00000010306 I
ENSPMAG00000001400 Petromyzon marinus ENSPMAG00000001400 I
ENSPPYG00000008037 Pongo abelii ENSPPYG00000008037 I
ENSPPYG00000011880 Pongo abelii ENSPPYG00000011880 I
ENSPSIG00000014746 Pelodiscus sinensis ENSPSIG00000014746 I
ENSSARG00000006597 Sorex araneus ENSSARG00000006597 I
ENSSHAG00000011682 Sarcophilus harrisii ENSSHAG00000011682 I
ENSSHAG00000018607 Sarcophilus harrisii ENSSHAG00000018607 I
ENSSSCG00000023124 Sus scrofa ENSSSCG00000023124 I
ENSSTOG00000012916 Ictidomys tridecemlineatus ENSSTOG00000012916 I
ENSSTOG00000014939 Ictidomys tridecemlineatus ENSSTOG00000014939 I
ENSTGUG00000009772 Taeniopygia guttata ENSTGUG00000009772 I
ENSXMAG00000003080 Xiphophorus maculatus ENSXMAG00000003080 I
ENSXMAG00000014774 Xiphophorus maculatus ENSXMAG00000014774 I
Gfo_R004756 Geospiza fortis Gfo_R004756 I
Gfo_R006283 Geospiza fortis Gfo_R006283 I
HHAL003331-PA Halyomorpha halys HHAL003331-PA I
HLH106 Drosophila melanogaster FBgn0261283 D
LotgiG224211 Lottia gigantea LotgiG224211 I
Myotis_brandtii_SREBF1_10023215 Myotis brandtii Myotis_brandtii_SREBF1_10023215 I
Myotis_brandtii_SREBF2_10014539 Myotis brandtii Myotis_brandtii_SREBF2_10014539 I
NV10553 Nasonia vitripennis NV10553 I
Ogr11708 Ophisaurus gracilis Ogr11708 I
Ogr14454 Ophisaurus gracilis Ogr14454 I
Pvit_05020 Pogona vitticeps Pvit_05020 I
Pvit_18605 Pogona vitticeps Pvit_18605 I
RPRC014734 Rhodnius prolixus RPRC014734 I
Sakowv30028178m.g Saccoglossus kowalevskii Sakowv30028178m.g I
SREBF1 Bos taurus ENSBTAG00000007884 I
SREBF1 Canis familiaris ENSCAFG00000018436 I
SREBF1 Callithrix jacchus ENSCJAG00000008953 I
SREBF1 Cavia porcellus ENSCPOG00000002439 I
srebf1 Danio rerio ENSDARG00000067607 I
Srebf1 Dipodomys ordii ENSDORG00000012333 I
SREBF1 Equus caballus ENSECAG00000019802 I
SREBF1 Echinops telfairi ENSETEG00000004179 I
SREBF1 Felis catus ENSFCAG00000001983 I
SREBF1 Homo sapiens ENSG00000072310 D
srebf1 Gasterosteus aculeatus ENSGACG00000012064 I
SREBF1 Gallus gallus ENSGALG00000027188 I
SREBF1 Gorilla gorilla ENSGGOG00000002713 I
SREBF1 Loxodonta africana ENSLAFG00000021644 I
SREBF1 Microcebus murinus ENSMICG00000012535 I
SREBF1 Macaca mulatta ENSMMUG00000023375 I
SREBF1 Monodelphis domestica ENSMODG00000014074 I
Srebf1 Mus musculus ENSMUSG00000020538 D
SREBF1 Ornithorhynchus anatinus ENSOANG00000012278 I
SREBF1 Otolemur garnettii ENSOGAG00000002910 I
SREBF1 Ochotona princeps ENSOPRG00000015069 I
srebf1 Oryzias latipes ENSORLG00000009437 I
SREBF1 Procavia capensis ENSPCAG00000014903 I
SREBF1 Pteropus vampyrus ENSPVAG00000005765 I
Srebf1 Rattus norvegicus ENSRNOG00000003463 I
SREBF1 Taeniopygia guttata ENSTGUG00000007313 I
srebf1 Tetraodon nigroviridis ENSTNIG00000011957 I
srebf1 Xenopus tropicalis XB-GENE-987572 I
SREBF2 Anolis carolinensis ENSACAG00000004146 I
SREBF2 Bos taurus ENSBTAG00000014265 I
SREBF2 Canis familiaris ENSCAFG00000001013 I
SREBF2 Cavia porcellus ENSCPOG00000013199 I
srebf2 Danio rerio ENSDARG00000063438 I
SREBF2 Dasypus novemcinctus ENSDNOG00000048031 I
Srebf2 Dipodomys ordii ENSDORG00000000691 I
SREBF2 Equus caballus ENSECAG00000024608 I
SREBF2 Erinaceus europaeus ENSEEUG00000003437 I
SREBF2 Echinops telfairi ENSETEG00000000459 I
SREBF2 Felis catus ENSFCAG00000014289 I
SREBF2 Homo sapiens ENSG00000198911 D
srebf2 Gasterosteus aculeatus ENSGACG00000007259 I
SREBF2 Gorilla gorilla ENSGGOG00000012065 I
SREBF2 Loxodonta africana ENSLAFG00000005791 I
SREBF2 Meleagris gallopavo ENSMGAG00000012074 I
SREBF2 Microcebus murinus ENSMICG00000000913 I
SREBF2 Myotis lucifugus ENSMLUG00000002549 I
SREBF2 Macaca mulatta ENSMMUG00000003357 I
SREBF2 Monodelphis domestica ENSMODG00000016612 I
Srebf2 Mus musculus ENSMUSG00000022463 D
SREBF2 Ornithorhynchus anatinus ENSOANG00000002461 I
SREBF2 Oryctolagus cuniculus ENSOCUG00000003178 I
SREBF2 Otolemur garnettii ENSOGAG00000014736 I
srebf2 Oryzias latipes ENSORLG00000014672 I
SREBF2 Procavia capensis ENSPCAG00000006497 I
SREBF2 Pan troglodytes ENSPTRG00000014439 I
SREBF2 Pteropus vampyrus ENSPVAG00000001177 I
Srebf2 Rattus norvegicus ENSRNOG00000007400 I
SREBF2 Sus scrofa ENSSSCG00000026092 I
SREBF2 Tupaia belangeri ENSTBEG00000016542 I
srebf2 Tetraodon nigroviridis ENSTNIG00000010835 I
srebf2 Takifugu rubripes ENSTRUG00000007413 I
SREBF2 Tursiops truncatus ENSTTRG00000017350 I
srebf2 Xenopus tropicalis XB-GENE-1011360 I
srebf2.L Xenopus laevis XB-GENE-1011364 I
SREBP Drosophila pseudoobscura FBgn0081122 I
SREBP Drosophila ananassae FBgn0100584 I
SREBP Drosophila erecta FBgn0108291 I
SREBP Drosophila grimshawi FBgn0122129 I
SREBP Drosophila persimilis FBgn0153336 I
SREBP Drosophila sechellia FBgn0174544 I
SREBP Drosophila simulans FBgn0186498 I
SREBP Drosophila virilis FBgn0198580 I
SREBP Drosophila willistoni FBgn0219495 I
SREBP Drosophila yakuba FBgn0236960 I
Tal_R010023 Tyto alba Tal_R010023 I
TC007163 Tribolium castaneum TC007163 I
tetur08g03870 Tetranychus urticae tetur08g03870 I
XP_002944649 Xenopus tropicalis XP_002944649 I
YQE_07365 Dendroctonus ponderosae YQE_07365 I