orange1.1g005651m.g (Citrus sinensis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 orange1.1g005651m.g T050531_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK18474.1
M01127_2.00 		Cannabis sativa
NRCACGTGCN
NGCACGTGYN		 PBM
Lambert et al.(2019)
pTH10273 		0.890 0.979
PK18474.1
M01768_2.00 		Cannabis sativa
NCACGWK
MWCGTGN		 PBM
Weirauch et al.(2014)
pTH9589 		0.890 0.979
MYC2
M01699_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8083 		0.890 0.958
MYC3
M01712_2.00 		Arabidopsis thaliana
MWYGTGNNNN
NNNNCACRWK		 PBM
Weirauch et al.(2014)
pTH8854 		0.890 0.958
MYC4
M01707_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8260 		0.890 0.938
OS01G0235700
M09894_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BHLH66_01 		0.890 0.896
BHLH13
M01698_2.00 		Arabidopsis thaliana
MCACGTGV
BCACGTGK		 PBM
Weirauch et al.(2014)
pTH7565 		0.879 0.917
PK09702.1
M01124_2.00 		Cannabis sativa
GCACGTGV
BCACGTGC		 PBM
Lambert et al.(2019)
pTH11374 		0.864 0.667
AT2G22750
M06730_2.00 		Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK		 Dap-seq
OMalley et al.(2016)
bHLH18_col_a 		0.858 0.604
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g005651m bHLH 504 551

Links

Other bHLH family TFs
Other Citrus sinensis TFs

570 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000906701 Angiostrongylus cantonensis ACAC_0000906701 N
ALUE_0002104001 Ascaris lumbricoides ALUE_0002104001 I
ANCCAN_05759 Ancylostoma caninum ANCCAN_05759 N
ASIM_0002076001 Anisakis simplex ASIM_0002076001 I
ASU_08570 Ascaris suum ASU_08570 I
CBG16541 Caenorhabditis briggsae CBG16541 N
CBN04759 Caenorhabditis brenneri CBN04759 N
CRE25068 Caenorhabditis remanei CRE25068 N
DICVIV_05604 Dictyocaulus viviparus DICVIV_05604 N
DME_0000409101 Dracunculus medinensis DME_0000409101 I
HCOI01110700 Haemonchus contortus HCOI01110700 N
HPBE_0001627301 Heligmosomoides bakeri HPBE_0001627301 N
HPLM_0000851001 Haemonchus placei HPLM_0000851001 N
NECAME_03891 Necator americanus NECAME_03891 N
PTRK_0001409600 Parastrongyloides trichosuri PTRK_0001409600 I
scaffold778-EXSNAP2012.5 Pristionchus exspectatus scaffold778-EXSNAP2012.5 N
sma-3 Caenorhabditis elegans WBGene00004857 N
SMUV_0000762601 Syphacia muris SMUV_0000762601 I
SPAL_0000266700 Strongyloides papillosus SPAL_0000266700 I
SVUK_0001208601 Strongylus vulgaris SVUK_0001208601 N
TCNE_0001440901 Toxocara canis TCNE_0001440901 I
TELCIR_10810 Teladorsagia circumcincta TELCIR_10810 N