Pavir.J25149 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.J25149 T050913_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J25149.1.p bHLH 28 76

Links

Other bHLH family TFs
Other Panicum virgatum TFs

89 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29883.m001988 Ricinus communis 29883.m001988 N 0.849
29908.m006255 Ricinus communis 29908.m006255 N 0.840
Aquca_017_00590 Aquilegia coerulea Aquca_017_00590 N 0.849
BGIOSGA028855 Oryza indica BGIOSGA028855 N 0.894
BGIOSGA030928 Oryza indica BGIOSGA030928 N 0.857
BRADI3G38360 Brachypodium distachyon BRADI3G38360 N 0.894
BRADI4G32470 Brachypodium distachyon BRADI4G32470 N 0.879
cassava36725.valid.m1 Manihot esculenta cassava36725.valid.m1 N 0.849
Ca_03755 Cicer arietinum Ca_03755 N 0.849
Ca_07790 Cicer arietinum Ca_07790 N 0.849
Ca_12194 Cicer arietinum Ca_12194 N 0.849
chr1.CM0375.380.nc Lotus japonicus chr1.CM0375.380.nc N 0.849
chr5.LjT29J15.30.nc Lotus japonicus chr5.LjT29J15.30.nc N 0.849
Ciclev10021443m.g Citrus clementina Ciclev10021443m.g N 0.849
Cla011475 Citrullus lanatus Cla011475 N 0.849
Cla015040 Citrullus lanatus Cla015040 N 0.849
Cucsa.289090 Cucumis sativus Cucsa.289090 N 0.849
Cucsa.388780 Cucumis sativus Cucsa.388780 N 0.849
Eucgr.B01487 Eucalyptus grandis Eucgr.B01487 N 0.849
Eucgr.H04337 Eucalyptus grandis Eucgr.H04337 N 0.849
evm.TU.supercontig_117.94 Carica papaya evm.TU.supercontig_117.94 N 0.849
F775_02130 Aegilops tauschii F775_02130 N 0.870
gene08188-v1.0-hybrid Fragaria vesca gene08188-v1.0-hybrid N 0.838
gene16564-v1.0-hybrid Fragaria vesca gene16564-v1.0-hybrid N 0.849
GLYMA02G16110 Glycine max GLYMA02G16110 N 0.849
GLYMA03G31510 Glycine max GLYMA03G31510 N 0.849
GLYMA10G03690 Glycine max GLYMA10G03690 N 0.849
GLYMA10G30430 Glycine max GLYMA10G30430 N 0.849
GLYMA19G34360 Glycine max GLYMA19G34360 N 0.849
GLYMA20G36770 Glycine max GLYMA20G36770 N 0.849
Gorai.001G242500 Gossypium raimondii Gorai.001G242500 N 0.849
Gorai.007G141800 Gossypium raimondii Gorai.007G141800 N 0.849
Gorai.007G277200 Gossypium raimondii Gorai.007G277200 N 0.849
GRMZM2G082630 Zea mays GRMZM2G082630 N 0.894
GRMZM2G113257 Zea mays GRMZM2G113257 N 0.861
GRMZM2G145146 Zea mays GRMZM2G145146 N 0.861
GSMUA_Achr3G06780_001 Musa acuminata GSMUA_Achr3G06780_001 N 0.849
GSMUA_Achr9G15140_001 Musa acuminata GSMUA_Achr9G15140_001 N 0.849
LPERR08G15030 Leersia perrieri LPERR08G15030 N 0.894
MDP0000176749 Malus domestica MDP0000176749 N 0.838
MDP0000295593 Malus domestica MDP0000295593 N 0.849
MLOC_2366 Hordeum vulgare MLOC_2366 N 0.855
MLOC_70640 Hordeum vulgare MLOC_70640 N 0.870
MTR_1g070870 Medicago truncatula MTR_1g070870 N 0.849
MTR_1g080890 Medicago truncatula MTR_1g080890 N 0.849
OB08G25230 Oryza brachyantha OB08G25230 N 0.894
OBART09G13210 Oryza barthii OBART09G13210 N 0.842
OGLUM08G19000 Oryza glumaepatula OGLUM08G19000 N 0.894
OMERI06G24090 Oryza meridionalis OMERI06G24090 I 0.870
OMERI09G10230 Oryza meridionalis OMERI09G10230 N 0.894
ONIVA08G20180 Oryza nivara ONIVA08G20180 N 0.894
ONIVA09G13640 Oryza nivara ONIVA09G13640 N 0.842
OPUNC08G16020 Oryza punctata OPUNC08G16020 N 0.894
OPUNC09G11520 Oryza punctata OPUNC09G11520 I 0.870
orange1.1g022649m.g Citrus sinensis orange1.1g022649m.g N 0.849
ORGLA08G0157100 Oryza glaberrima ORGLA08G0157100 N 0.894
ORUFI08G20260 Oryza rufipogon ORUFI08G20260 N 0.894
ORUFI09G14130 Oryza rufipogon ORUFI09G14130 N 0.842
OS08G0477900 Oryza sativa OS08G0477900 N 0.894
Pavir.Ba01985 Panicum virgatum Pavir.Ba01985 N 0.864
Pavir.Fa00651 Panicum virgatum Pavir.Fa00651 N 0.914
Pavir.J16121 Panicum virgatum Pavir.J16121 N 0.864
PGSC0003DMG400006089 Solanum tuberosum PGSC0003DMG400006089 N 0.838
PGSC0003DMG400010208 Solanum tuberosum PGSC0003DMG400010208 I 0.857
PGSC0003DMG400013393 Solanum tuberosum PGSC0003DMG400013393 N 0.838
PK20184.1 Cannabis sativa PK20184.1 N 0.849
PK25419.1 Cannabis sativa PK25419.1 N 0.849
Pm003525 Prunus mume Pm003525 N 0.849
Pm020229 Prunus mume Pm020229 N 0.838
POPTR_0002s04620 Populus trichocarpa POPTR_0002s04620 N 0.849
PRUPE_ppa008172mg Prunus persica PRUPE_ppa008172mg N 0.849
PRUPE_ppa009299mg Prunus persica PRUPE_ppa009299mg N 0.838
SapurV1A.0006s1290 Salix purpurea SapurV1A.0006s1290 N 0.849
Sb02g026920 Sorghum bicolor Sb02g026920 N 0.861
Sb07g023280 Sorghum bicolor Sb07g023280 N 0.894
Si014356m.g Setaria italica Si014356m.g N 0.894
Si033077m.g Setaria italica Si033077m.g N 0.861
Solyc02g076920.2 Solanum lycopersicum Solyc02g076920.2 I 0.857
Solyc09g083220.2 Solanum lycopersicum Solyc09g083220.2 N 0.838
TCM_004217 Theobroma cacao TCM_004217 N 0.849
TCM_026346 Theobroma cacao TCM_026346 N 0.849
Traes_2AL_7A37B5232 Triticum aestivum Traes_2AL_7A37B5232 N 0.870
Traes_2BL_649181D92 Triticum aestivum Traes_2BL_649181D92 N 0.870
Traes_2DL_5F0BD9D6F Triticum aestivum Traes_2DL_5F0BD9D6F N 0.870
Traes_5BL_553BE31FE Triticum aestivum Traes_5BL_553BE31FE N 0.879
TRIUR3_09991 Triticum urartu TRIUR3_09991 N 0.870
VIT_05s0020g04620 Vitis vinifera VIT_05s0020g04620 N 0.849
VIT_07s0141g00220 Vitis vinifera VIT_07s0141g00220 N 0.849
VIT_14s0030g02230 Vitis vinifera VIT_14s0030g02230 N 0.849