CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Jdp2
(
Mus musculus
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00170 (bZIP_1)
IPR011616
ENSMUSG00000034271
T060478_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Jdp2
M00125_2.00
Mus musculus
NRTGAYDNNN
NNNHRTCAYN
PBM
Badis et al.(2009)
Jundm2_0911
(Direct)
(Direct)
Jdp2
M01810_2.00
Mus musculus
NNTGACGYMW
WKRCGTCANN
PBM
Weirauch et al.(2014)
pTH5464
(Direct)
(Direct)
Jdp2
M02861_2.00
Mus musculus
ATGASTCAT
ATGASTCAT
SELEX
Jolma et al.(2013)
Jdp2_1
(Direct)
(Direct)
Jdp2
M02862_2.00
Mus musculus
VATGACGTCAYN
NRTGACGTCATB
SELEX
Jolma et al.(2013)
Jdp2_2
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Jdp2
M10033_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$JDP2_03
0.944
1.000
JDP2
M02836_2.00
Homo sapiens
ATGASTCAT
ATGASTCAT
SELEX
Jolma et al.(2013)
JDP2_1
0.941
0.984
JDP2
M02837_2.00
Homo sapiens
NRTGACGTCATB
VATGACGTCAYN
SELEX
Jolma et al.(2013)
JDP2_2
0.941
0.984
JDP2
M02838_2.00
Homo sapiens
ATGASTCAT
ATGASTCAT
SELEX
Jolma et al.(2013)
JDP2_3
0.941
0.984
JDP2
M02839_2.00
Homo sapiens
NRTGACGTCATN
NATGACGTCAYN
SELEX
Jolma et al.(2013)
JDP2_4
0.941
0.984
JDP2
M04285_2.00
Homo sapiens
NATGASTCATV
BATGASTCATN
SELEX
Yin et al.(2017)
JDP2_eDBD_HT-SELEX_1
0.941
0.984
JDP2
M04286_2.00
Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN
SELEX
Yin et al.(2017)
JDP2_eDBD_HT-SELEX_2
0.941
0.984
JDP2
M04289_2.00
Homo sapiens
NRTGMSKCAYN
NRTGMSKCAYN
SELEX
Yin et al.(2017)
JDP2_FL_HT-SELEX_1
0.941
0.984
JDP2
M04290_2.00
Homo sapiens
NRTKACRTMAYN
NRTKAYGTMAYN
SELEX
Yin et al.(2017)
JDP2_FL_HT-SELEX_2
0.941
0.984
JDP2
M04287_2.00
Homo sapiens
BATGASTCAYN
NRTGASTCATV
SELEX
Yin et al.(2017)
JDP2_eDBD_Methyl-HT-SELEX_1
0.941
0.984
JDP2
M04288_2.00
Homo sapiens
NRTGACRTCAYN
NRTGAYGTCAYN
SELEX
Yin et al.(2017)
JDP2_eDBD_Methyl-HT-SELEX_2
0.941
0.984
JDP2
M04291_2.00
Homo sapiens
NRTGASTCAYN
NRTGASTCAYN
SELEX
Yin et al.(2017)
JDP2_FL_Methyl-HT-SELEX_1
0.941
0.984
JDP2
M04292_2.00
Homo sapiens
NVTKACRTCAYN
NRTGAYGTMABN
SELEX
Yin et al.(2017)
JDP2_FL_Methyl-HT-SELEX_2
0.941
0.984
Atf3
M00758_2.00
Mus musculus
NNRTKAYNN
NNRTMAYNN
PBM
Weirauch et al.(2013)
pTH2684
0.879
0.703
Atf3
M01807_2.00
Mus musculus
GATGACGY
RCGTCATC
PBM
Weirauch et al.(2014)
pTH5018
0.879
0.703
Atf3
M08825_2.00
Mus musculus
VTGACTCAB
VTGAGTCAB
Misc
Kulakovskiy et al.(2013)
ATF3_MOUSE.H11MO.0.A
0.879
0.703
Atf3
M03648_2.00
Drosophila melanogaster
NRTKACGTMAYN
NRTKACGTMAYN
SELEX
Nitta et al.(2015)
Atf3_1
0.825
0.562
ATF3
M04321_2.00
Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN
SELEX
Yin et al.(2017)
ATF3_eDBD_HT-SELEX
0.786
0.391
ATF3
M04323_2.00
Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN
SELEX
Yin et al.(2017)
ATF3_FL_HT-SELEX
0.786
0.391
ATF3
M04032_2.00
Homo sapiens
RTGACGTCAK
MTGACGTCAY
SELEX
Rodriguez-Martinez et al.(2017)
ATF3.1
0.786
0.391
ATF3
M04033_2.00
Homo sapiens
RTGACTCAY
RTGAGTCAY
SELEX
Rodriguez-Martinez et al.(2017)
ATF3.2
0.786
0.391
ATF3
M07822_2.00
Homo sapiens
VGTCACGTGRB
VYCACGTGACB
ChIP-seq
Gerstein et al.(2012)
GM12878_ATF3_HudsonAlpha
0.786
0.391
ATF3
M07823_2.00
Homo sapiens
VGTCACGTGRB
VYCACGTGACB
ChIP-seq
Gerstein et al.(2012)
H1-hESC_ATF3_HudsonAlpha
0.786
0.391
ATF3
M07824_2.00
Homo sapiens
VGTCACGTGRB
VYCACGTGACB
ChIP-seq
Gerstein et al.(2012)
HepG2_ATF3_HudsonAlpha
0.786
0.391
ATF3
M07825_2.00
Homo sapiens
VRTSACGTVR
YBACGTSAYB
ChIP-seq
Gerstein et al.(2012)
K562_ATF3_Harvard
0.786
0.391
ATF3
M08187_2.00
Homo sapiens
GTCACGTG
CACGTGAC
ChIP-seq
Contrino et al.(2012)
Mv41
0.786
0.391
ATF3
M08188_2.00
Homo sapiens
NRTGASTCAY
RTGASTCAYN
ChIP-seq
Contrino et al.(2012)
Mv43
0.786
0.391
ATF3
M08801_2.00
Homo sapiens
RRTSACGTVRB
VYBACGTSAYY
Misc
Kulakovskiy et al.(2013)
ATF3_HUMAN.H11MO.0.A
0.786
0.391
ATF3
M09489_2.00
Homo sapiens
NVTGASTCABNN
NNVTGASTCABN
Misc
Heinz et al.(2010)
GBM-ATF3_GSE33912
0.786
0.391
ATF3
M09977_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ATF3_02
0.786
0.391
ATF3
M09978_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ATF3_05
0.786
0.391
ATF3
M09979_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ATF3_Q6_01
0.786
0.391
ATF3
M09980_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ATF3_Q6_02
0.786
0.391
ATF3
M09981_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ATF3_Q6
0.786
0.391
ATF3
M04322_2.00
Homo sapiens
NRTGACRTCAYH
DRTGAYGTCAYN
SELEX
Yin et al.(2017)
ATF3_eDBD_Methyl-HT-SELEX
0.786
0.391
ATF3
M04324_2.00
Homo sapiens
NRTGACRTCAYH
DRTGAYGTCAYN
SELEX
Yin et al.(2017)
ATF3_FL_Methyl-HT-SELEX
0.786
0.391
For this family, TFs with SR scores >
0.782
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00125_2.00
bZIP
16
79
EEEERRKRRREKNKVAAARCRNKKKERTEFLQRESERLELMNAELKTQIEELKLERQQLILMLN
M01810_2.00
bZIP
16
79
EEEERRKRRREKNKVAAARCRNKKKERTEFLQRESERLELMNAELKTQIEELKLERQQLILMLN
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000059724
bZIP
70
133
EEEERRKRRREKNKVAAARCRNKKKERTEFLQRESERLELMNAELKTQIEELKLERQQLILMLN
ENSMUSP00000129985
bZIP
70
133
EEEERRKRRREKNKVAAARCRNKKKERTEFLQRESERLELMNAELKTQIEELKLERQQLILMLN
ENSMUSP00000136823
bZIP
70
133
EEEERRKRRREKNKVAAARCRNKKKERTEFLQRESERLELMNAELKTQIEELKLERQQLILMLN
Links
Other
bZIP
family TFs
Other
Mus musculus
TFs
204 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AB07208.1
Alternaria brassicicola
AB07208.1
N
ACRE_022770
Acremonium chrysogenum
ACRE_022770
N
BBA_02591
Beauveria bassiana
BBA_02591
N
Bcin03g01100
Botrytis cinerea
Bcin03g01100
N
CCM_03094
Cordyceps militaris
CCM_03094
N
CFIO01_11426
Colletotrichum fioriniae
CFIO01_11426
N
CGGC5_6062
Colletotrichum gloeosporioides
CGGC5_6062
N
CH063_05999
Colletotrichum higginsianum
CH063_05999
N
CHGG_02432
Chaetomium globosum
CHGG_02432
N
CMQ_5876
Grosmannia clavigera
CMQ_5876
N
Cob_11832
Colletotrichum orbiculare
Cob_11832
N
COCC4DRAFT_183954
Bipolaris maydis
COCC4DRAFT_183954
N
COCCADRAFT_89591
Bipolaris zeicola
COCCADRAFT_89591
N
COCMIDRAFT_22048
Bipolaris oryzae
COCMIDRAFT_22048
N
COCSADRAFT_130904
Bipolaris sorokiniana
COCSADRAFT_130904
N
COCVIDRAFT_34721
Bipolaris victoriae
COCVIDRAFT_34721
N
CSUB01_00157
Colletotrichum sublineola
CSUB01_00157
N
CTHT_0029190
Chaetomium thermophilum
CTHT_0029190
N
DOTSEDRAFT_84385
Dothistroma septosporum
DOTSEDRAFT_84385
N
estExt_fgenesh1_pg.C_chr_11192
Mycosphaerella graminicola
estExt_fgenesh1_pg.C_chr_11192
N
estExt_Genewise1.C_11835
Neurospora discreta
estExt_Genewise1.C_11835
N
estExt_Genewise1.C_20573
Cochliobolus heterostrophus C5
estExt_Genewise1.C_20573
N
e_gw1.1.3574.1
Cryphonectria parasitica
e_gw1.1.3574.1
N
F503_00183
Ophiostoma piceae uamh
F503_00183
N
FFUJ_13348
Fusarium fujikuroi
FFUJ_13348
N
FGRRES_20289
Fusarium graminearum
FGRRES_20289
N
FOXG_07866
Fusarium oxysporum
FOXG_07866
N
FPSE_00911
Fusarium pseudograminearum
FPSE_00911
N
FVEG_04788
Fusarium verticillioides
FVEG_04788
N
GGTG_02625
Gaeumannomyces graminis
GGTG_02625
N
GLRG_03112
Colletotrichum graminicola
GLRG_03112
N
gw1.1.1306.1
Mycosphaerella fijiensis
gw1.1.1306.1
N
gw1.6.94.1
Nectria haematococca
gw1.6.94.1
N
HMPREF1624_04517
Sporothrix schenckii
HMPREF1624_04517
N
LEMA_P044390.1
Leptosphaeria maculans
LEMA_P044390.1
N
MAC_02105
Metarhizium acridum
MAC_02105
N
MAJ_05489
Metarhizium majus
MAJ_05489
N
MAM_02243
Metarhizium album
MAM_02243
N
MANI_002092
Metarhizium anisopliae
MANI_002092
N
MBM_07053
Marssonina brunnea
MBM_07053
N
MBR_07319
Metarhizium brunneum
MBR_07319
N
MGG_07458
Magnaporthe oryzae
MGG_07458
N
MGU_05987
Metarhizium guizhouense
MGU_05987
N
MPH_00903
Macrophomina phaseolina
MPH_00903
N
MYCFIDRAFT_10858
Pseudocercospora fijiensis
MYCFIDRAFT_10858
N
Mycgr3G107474
Zymoseptoria tritici
Mycgr3G107474
N
NCU09529
Neurospora crassa
NCU09529
N
NechaG858
Fusarium solani
NechaG858
N
NEUTE1DRAFT_75753
Neurospora tetrasperma
NEUTE1DRAFT_75753
N
OCS_02045
Ophiocordyceps sinensis
OCS_02045
N
OIDMADRAFT_49755
Oidiodendron maius
OIDMADRAFT_49755
N
PDE_07378
Penicillium oxalicum
PDE_07378
N
PEX1_060150
Penicillium expansum
PEX1_060150
N
PITC_074210
Penicillium italicum
PITC_074210
N
PODANS_2_8520
Podospora anserina
PODANS_2_8520
N
PTRG_06039
Pyrenophora triticirepentis
PTRG_06039
N
PTT_08652
Pyrenophora teres
PTT_08652
N
PV04_08874
Capronia semiimmersa
PV04_08874
N
PV09_02763
Verruconis gallopava
PV09_02763
N
S40285_01658
Stachybotrys chlorohalonata
S40285_01658
N
S40288_00446
Stachybotrys chartarum
S40288_00446
N
SAPIO_CDS8865
Scedosporium apiospermum
SAPIO_CDS8865
N
SBOR_3507
Sclerotinia borealis
SBOR_3507
N
SEPMUDRAFT_17793
Sphaerulina musiva
SEPMUDRAFT_17793
N
SNOG_07486
Phaeosphaeria nodorum
SNOG_07486
N
SNOG_07486
Stagonospora nodorum
SNOG_07486
N
SPBR_05600
Sporothrix brasiliensis
SPBR_05600
N
SS1G_00787
Sclerotinia sclerotiorum
SS1G_00787
N
THITE_2107310
Thielavia terrestris
THITE_2107310
N
TRIATDRAFT_321925
Trichoderma atroviride
TRIATDRAFT_321925
N
TRIREDRAFT_3449
Trichoderma reesei
TRIREDRAFT_3449
N
TRIVIDRAFT_229241
Trichoderma virens
TRIVIDRAFT_229241
N
VHEMI00945
Torrubiella hemipterigena
VHEMI00945
N
X797_006673
Metarhizium robertsii
X797_006673
N