Gfo_R006518 (Geospiza fortis)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Gfo_R006518 T070212_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HLF
M02831_2.00 		Homo sapiens
NRTTAYRTAABN
NVTTAYRTAAYN		 SELEX
Jolma et al.(2013)
HLF_1 		0.893 0.984
Hlf
M02860_2.00 		Mus musculus
KRTTACGTAAYN
NRTTACGTAAYM		 SELEX
Jolma et al.(2013)
Hlf_1 		0.893 0.984
HLF
M04245_2.00 		Homo sapiens
NVTTRCRYAABN
NVTTRYGYAABN		 SELEX
Yin et al.(2017)
HLF_FL_HT-SELEX 		0.893 0.984
HLF
M04016_2.00 		Homo sapiens
RTKAYRTAAB
VTTAYRTMAY		 SELEX
Rodriguez-Martinez et al.(2017)
HLF.1 		0.893 0.984
HLF
M08786_2.00 		Homo sapiens
NRTTRYGTAAYMS
SKRTTACRYAAYN		 Misc
Kulakovskiy et al.(2013)
HLF_HUMAN.H11MO.0.C 		0.893 0.984
Hlf
M08815_2.00 		Mus musculus
VTTRTGYAABH
DVTTRCAYAAB		 Misc
Kulakovskiy et al.(2013)
HLF_MOUSE.H11MO.0.C 		0.893 0.984
HLF
M09937_2.00 		Homo sapiens
ATKRYGTAAY
RTTACRYMAT		 Transfac
Matys et al.(2006)
V$HLF_01 		0.893 0.984
HLF
M04246_2.00 		Homo sapiens
NVTTRCRYAABN
NVTTRYGYAABN		 SELEX
Yin et al.(2017)
HLF_FL_Methyl-HT-SELEX 		0.893 0.984
Tef
M01803_2.00 		Mus musculus
NVTTRYVNNN
NNNBRYAABN		 PBM
Weirauch et al.(2014)
pTH5078 		0.844 0.790
TEF
M02849_2.00 		Homo sapiens
NRTTAYGTAAYN
NRTTACRTAAYN		 SELEX
Jolma et al.(2013)
TEF_1 		0.844 0.790
TEF
M02850_2.00 		Homo sapiens
NVTTAYGTAABN
NVTTACRTAABN		 SELEX
Jolma et al.(2013)
TEF_2 		0.844 0.790
TEF
M04325_2.00 		Homo sapiens
NRTTACGTAAYN
NRTTACGTAAYN		 SELEX
Yin et al.(2017)
TEF_eDBD_HT-SELEX 		0.844 0.790
TEF
M09983_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TEF_05 		0.844 0.790
TEF
M09984_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TEF_06 		0.844 0.790
TEF
M09985_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TEF_Q6 		0.844 0.790
TEF
M09986_2.00 		Homo sapiens
MTKAYGTAAY
RTTACRTMAK		 Transfac
Matys et al.(2006)
V$VBP_01 		0.844 0.790
TEF
M04326_2.00 		Homo sapiens
NRTTACRTAAYN
NRTTAYGTAAYN		 SELEX
Yin et al.(2017)
TEF_eDBD_Methyl-HT-SELEX 		0.844 0.790
Pdp1
M03645_2.00 		Drosophila melanogaster
VTTACGTAAB
VTTACGTAAB		 SELEX
Nitta et al.(2015)
Pdp1_1 		0.795 0.694
Pdp1
M03646_2.00 		Drosophila melanogaster
RTTACGTAAY
RTTACGTAAY		 SELEX
Nitta et al.(2015)
Pdp1_2 		0.795 0.694
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R006518 bZIP 177 238

Links

Other bZIP family TFs
Other Geospiza fortis TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R005501 Calypte anna Aan_R005501 N 0.000
ACYPI005198 Acyrthosiphon pisum ACYPI005198 I 0.000
Afo_R002778 Aptenodytes forsteri Afo_R002778 I 0.000
Alligator_sinensis_CCG019430.1 Alligator sinensis Alligator_sinensis_CCG019430.1 I 0.000
Cmyd_10006239 Chelonia mydas Cmyd_10006239 I 0.000
D918_00272 Trichuris suis D918_00272 N 0.000
EFV61981 Trichinella spiralis EFV61981 I 0.000
ENSAMEG00000005262 Ailuropoda melanoleuca ENSAMEG00000005262 I 0.000
ENSAMEG00000016108 Ailuropoda melanoleuca ENSAMEG00000016108 I 0.000
ENSAMXG00000004433 Astyanax mexicanus ENSAMXG00000004433 I 0.000
ENSAPLG00000004350 Anas platyrhynchos ENSAPLG00000004350 I 0.000
ENSAPLG00000009927 Anas platyrhynchos ENSAPLG00000009927 N 0.000
ENSBTAP00000048182-D1 Bos grunniens ENSBTAP00000048182-D1 I 0.000
ENSCPOG00000000336 Cavia porcellus ENSCPOG00000000336 I 0.000
ENSCPOG00000007162 Cavia porcellus ENSCPOG00000007162 I 0.000
ENSCSAG00000005171 Chlorocebus sabaeus ENSCSAG00000005171 I 0.000
ENSCSAG00000015119 Chlorocebus sabaeus ENSCSAG00000015119 I 0.000
ENSDORG00000001608 Dipodomys ordii ENSDORG00000001608 I 0.000
ENSFALG00000002308 Ficedula albicollis ENSFALG00000002308 I 0.000
ENSLACG00000017438 Latimeria chalumnae ENSLACG00000017438 I 0.000
ENSLOCG00000012358 Lepisosteus oculatus ENSLOCG00000012358 I 0.000
ENSLOCG00000015320 Lepisosteus oculatus ENSLOCG00000015320 I 0.000
ENSMEUG00000013693 Macropus eugenii ENSMEUG00000013693 I 0.000
ENSMMUG00000010226 Macaca mulatta ENSMMUG00000010226 I 0.000
ENSMPUG00000002095 Mustela putorius furo ENSMPUG00000002095 I 0.000
ENSMPUG00000007107 Mustela putorius furo ENSMPUG00000007107 I 0.000
ENSNLEG00000010141 Nomascus leucogenys ENSNLEG00000010141 I 0.000
ENSNLEG00000015457 Nomascus leucogenys ENSNLEG00000015457 I 0.000
ENSOARG00000009456 Ovis aries ENSOARG00000009456 I 0.000
ENSOARG00000019742 Ovis aries ENSOARG00000019742 I 0.000
ENSONIG00000000432 Oreochromis niloticus ENSONIG00000000432 I 0.000
ENSONIG00000015871 Oreochromis niloticus ENSONIG00000015871 I 0.000
ENSONIG00000016308 Oreochromis niloticus ENSONIG00000016308 I 0.000
ENSP00000264444 Macaca fascicularis ENSP00000264444 I 0.000
ENSP00000264444-D1 Bos grunniens ENSP00000264444-D1 I 0.000
ENSP00000331152 Macaca fascicularis ENSP00000331152 I 0.000
ENSPANG00000000314 Papio anubis ENSPANG00000000314 I 0.000
ENSPANG00000020804 Papio anubis ENSPANG00000020804 I 0.000
ENSPFOG00000004367 Poecilia formosa ENSPFOG00000004367 I 0.000
ENSPFOG00000017086 Poecilia formosa ENSPFOG00000017086 I 0.000
ENSPFOG00000021922 Poecilia formosa ENSPFOG00000021922 I 0.000
ENSPMAG00000001074 Petromyzon marinus ENSPMAG00000001074 I 0.000
ENSPPYG00000012331 Pongo abelii ENSPPYG00000012331 I 0.000
ENSPSIG00000012742 Pelodiscus sinensis ENSPSIG00000012742 I 0.000
ENSPSIG00000014955 Pelodiscus sinensis ENSPSIG00000014955 N 0.000
ENSSHAG00000005374 Sarcophilus harrisii ENSSHAG00000005374 I 0.000
ENSSTOG00000000718 Ictidomys tridecemlineatus ENSSTOG00000000718 I 0.000
ENSSTOG00000025776 Ictidomys tridecemlineatus ENSSTOG00000025776 I 0.000
ENSTBEG00000017602 Tupaia belangeri ENSTBEG00000017602 I 0.000
ENSTGUG00000010598 Taeniopygia guttata ENSTGUG00000010598 I 0.000
ENSXMAG00000004566 Xiphophorus maculatus ENSXMAG00000004566 I 0.000
ENSXMAG00000007056 Xiphophorus maculatus ENSXMAG00000007056 I 0.000
ENSXMAG00000012758 Xiphophorus maculatus ENSXMAG00000012758 I 0.000
fgenesh2_pg.scaffold_205000025 Branchiostoma floridae fgenesh2_pg.scaffold_205000025 I 0.000
Gfo_R002259 Geospiza fortis Gfo_R002259 I 0.000
MXD1 Anolis carolinensis ENSACAG00000006004 I 0.000
MXD1 Bos taurus ENSBTAG00000001042 I 0.000
MXD1 Canis familiaris ENSCAFG00000032746 I 0.000
MXD1 Choloepus hoffmanni ENSCHOG00000003047 I 0.000
MXD1 Callithrix jacchus ENSCJAG00000019266 I 0.000
mxd1 Danio rerio ENSDARG00000032039 N 0.000
MXD1 Dasypus novemcinctus ENSDNOG00000034010 I 0.000
MXD1 Equus caballus ENSECAG00000011257 I 0.000
MXD1 Echinops telfairi ENSETEG00000017347 I 0.000
MXD1 Felis catus ENSFCAG00000030345 I 0.000
MXD1 Homo sapiens ENSG00000059728 I 0.000
mxd1 Gasterosteus aculeatus ENSGACG00000013215 I 0.000
MXD1 Gallus gallus ENSGALG00000013882 I 0.000
MXD1 Meleagris gallopavo ENSMGAG00000003405 I 0.000
MXD1 Myotis lucifugus ENSMLUG00000016646 N 0.000
MXD1 Monodelphis domestica ENSMODG00000011481 I 0.000
Mxd1 Mus musculus ENSMUSG00000001156 I 0.000
MXD1 Oryctolagus cuniculus ENSOCUG00000015820 I 0.000
MXD1 Otolemur garnettii ENSOGAG00000008412 I 0.000
mxd1 Oryzias latipes ENSORLG00000015461 I 0.000
MXD1 Procavia capensis ENSPCAG00000001189 I 0.000
MXD1 Pan troglodytes ENSPTRG00000012023 I 0.000
MXD1 Pteropus vampyrus ENSPVAG00000001244 I 0.000
Mxd1 Rattus norvegicus ENSRNOG00000017720 I 0.000
MXD1 Sorex araneus ENSSARG00000004728 I 0.000
MXD1 Sus scrofa ENSSSCG00000008334 I 0.000
MXD1 Tupaia belangeri ENSTBEG00000005535 I 0.000
mxd1 Tetraodon nigroviridis ENSTNIG00000000414 I 0.000
MXD1 Vicugna pacos ENSVPAG00000001762 I 0.000
mxd1 Xenopus tropicalis XB-GENE-943715 N 0.000
mxd1.L Xenopus laevis XB-GENE-943720 N 0.000
MXI1 Anolis carolinensis ENSACAG00000006009 I 0.000
MXI1 Bos taurus ENSBTAG00000017263 I 0.000
MXI1 Canis familiaris ENSCAFG00000010706 I 0.000
MXI1 Choloepus hoffmanni ENSCHOG00000006556 I 0.000
MXI1 Callithrix jacchus ENSCJAG00000018614 I 0.000
MXI1 Cavia porcellus ENSCPOG00000022901 I 0.000
mxi1 Danio rerio ENSDARG00000040884 I 0.000
MXI1 Dasypus novemcinctus ENSDNOG00000002479 I 0.000
Mxi1 Dipodomys ordii ENSDORG00000005656 I 0.000
MXI1 Felis catus ENSFCAG00000004882 I 0.000
MXI1 Homo sapiens ENSG00000119950 D 0.000
MXI1 Gallus gallus ENSGALG00000008555 I 0.000
MXI1 Gorilla gorilla ENSGGOG00000013614 I 0.000
MXI1 Loxodonta africana ENSLAFG00000014348 I 0.000
MXI1 Meleagris gallopavo ENSMGAG00000010768 I 0.000
MXI1 Macaca mulatta ENSMMUG00000014350 I 0.000
MXI1 Monodelphis domestica ENSMODG00000010546 I 0.000
Mxi1 Mus musculus ENSMUSG00000025025 D 0.000
MXI1 Ornithorhynchus anatinus ENSOANG00000001600 I 0.000
MXI1 Otolemur garnettii ENSOGAG00000000570 I 0.000
MXI1 Oryzias latipes ENSORLG00000005955 I 0.000
mxi1 Oryzias latipes ENSORLG00000015172 I 0.000
MXI1 Pan troglodytes ENSPTRG00000002936 I 0.000
MXI1 Pteropus vampyrus ENSPVAG00000014983 I 0.000
Mxi1 Rattus norvegicus ENSRNOG00000034078 I 0.000
MXI1 Tetraodon nigroviridis ENSTNIG00000013330 I 0.000
MXI1 Takifugu rubripes ENSTRUG00000006785 I 0.000
MXI1 Tursiops truncatus ENSTTRG00000007895 I 0.000
MXI1 Vicugna pacos ENSVPAG00000003400 I 0.000
mxi1 Xenopus tropicalis XB-GENE-493086 I 0.000
Myotis_brandtii_Mxd1_10023164 Myotis brandtii Myotis_brandtii_Mxd1_10023164 N 0.000
Myotis_brandtii_Mxi1_10027965 Myotis brandtii Myotis_brandtii_Mxi1_10027965 I 0.000
NV10716 Nasonia vitripennis NV10716 I 0.000
Ogr05439 Ophisaurus gracilis Ogr05439 I 0.000
Ogr11151 Ophisaurus gracilis Ogr11151 I 0.000
Pvit_06637 Pogona vitticeps Pvit_06637 I 0.000
Pvit_07222 Pogona vitticeps Pvit_07222 I 0.000
RPRC006485 Rhodnius prolixus RPRC006485 I 0.000
Sakowv30007563m.g Saccoglossus kowalevskii Sakowv30007563m.g I 0.000
Tal_R006513 Tyto alba Tal_R006513 I 0.000
tetur09g05570 Tetranychus urticae tetur09g05570 I 0.000
TMUE_s0057007400 Trichuris muris TMUE_s0057007400 N 0.000
TTRE_0000765101 Trichuris trichiura TTRE_0000765101 N 0.000