Pavir.Ea03193 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.Ea03193 T072375_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TGA6
M01780_2.00 		Arabidopsis thaliana
NNTGACGTMA
TKACGTCANN		 PBM
Weirauch et al.(2014)
pTH8691 		0.784 0.922
TGA6
M01055_2.00 		Arabidopsis thaliana
NNVTGACGTMN
NKACGTCABNN		 PBM
Sullivan et al.(2014)
pTH8858 		0.784 0.922
PK09021.1
M01155_2.00 		Cannabis sativa
NNTGACGTMA
TKACGTCANN		 PBM
Lambert et al.(2019)
pTH10175 		0.784 0.922
TGA6
M06773_2.00 		Arabidopsis thaliana
DRTGACGTCAKCDNN
NNHGMTGACGTCAYH		 Dap-seq
OMalley et al.(2016)
TGA6_col_a 		0.784 0.922
TGA6
M06774_2.00 		Arabidopsis thaliana
NRTGACGTCAKCDNN
NNHGMTGACGTCAYN		 Dap-seq
OMalley et al.(2016)
TGA6_colamp_a 		0.784 0.922
TGA2
M01784_2.00 		Arabidopsis thaliana
NNACGTCABN
NVTGACGTNN		 PBM
Weirauch et al.(2014)
pTH8820 		0.784 0.902
TGA2
M00856_2.00 		Arabidopsis thaliana
NVTGACGTMN
NKACGTCABN		 PBM
Franco-Zorrilla et al.(2014)
TGA2 		0.784 0.902
TGA5
M01785_2.00 		Arabidopsis thaliana
VTGACGTN
NACGTCAB		 PBM
Weirauch et al.(2014)
pTH8180 		0.784 0.902
TGA2
M06785_2.00 		Arabidopsis thaliana
YNMCGYCABCD
HGVTGRCGKNR		 Dap-seq
OMalley et al.(2016)
TGA2_colamp_v31 		0.784 0.902
TGA2
M06786_2.00 		Arabidopsis thaliana
NNNNNDNHGMTGACGTCAYH
DRTGACGTCAKCDNHNNNNN		 Dap-seq
OMalley et al.(2016)
TGA2_col 		0.784 0.902
TGA5
M06787_2.00 		Arabidopsis thaliana
DRTGACGTCAKCDN
NHGMTGACGTCAYH		 Dap-seq
OMalley et al.(2016)
TGA5_col_v3a 		0.784 0.902
TGA2
M09917_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TGA2_01 		0.784 0.902
TGA2
M09918_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TGA2_Q2 		0.784 0.902
HBP1B_WHEAT
M10043_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HBP1B_Q6 		0.784 0.863
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea03193.1.p bZIP 180 230

Links

Other bZIP family TFs
Other Panicum virgatum TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30131.m007163 Ricinus communis 30131.m007163 I 0.784
Aquca_004_00791 Aquilegia coerulea Aquca_004_00791 I 0.784
Aquca_009_00424 Aquilegia coerulea Aquca_009_00424 I 0.784
BGIOSGA000624 Oryza indica BGIOSGA000624 I 0.782
BGIOSGA003265 Oryza indica BGIOSGA003265 I 0.784
Bo1g139470 Brassica oleracea Bo1g139470 I 0.784
Bo2g007460 Brassica oleracea Bo2g007460 I 0.784
Bo3g064830 Brassica oleracea Bo3g064830 I 0.784
Bo5g133550 Brassica oleracea Bo5g133550 I 0.784
Bo9g175710 Brassica oleracea Bo9g175710 I 0.784
Bostr.13129s0278 Boechera stricta Bostr.13129s0278 I 0.784
Bostr.13129s0279 Boechera stricta Bostr.13129s0279 I 0.784
Bostr.3640s0002 Boechera stricta Bostr.3640s0002 I 0.784
Bra001443 Brassica rapa Bra001443 I 0.784
Bra009241 Brassica rapa Bra009241 I 0.784
Bra028713 Brassica rapa Bra028713 I 0.784
Bra034767 Brassica rapa Bra034767 I 0.784
Bra038705 Brassica rapa Bra038705 I 0.784
BRADI2G10830 Brachypodium distachyon BRADI2G10830 I 0.784
Cagra.0430s0055 Capsella grandiflora Cagra.0430s0055 I 0.784
Cagra.16209s0003 Capsella grandiflora Cagra.16209s0003 I 0.784
Cagra.16209s0004 Capsella grandiflora Cagra.16209s0004 I 0.784
Carubv10001409m.g Capsella rubella Carubv10001409m.g I 0.784
Carubv10001413m.g Capsella rubella Carubv10001413m.g I 0.784
cassava1426.valid.m1 Manihot esculenta cassava1426.valid.m1 I 0.784
cassava1427.valid.m1 Manihot esculenta cassava1427.valid.m1 I 0.784
cassava22236.valid.m1 Manihot esculenta cassava22236.valid.m1 I 0.784
cassava22237.valid.m1 Manihot esculenta cassava22237.valid.m1 I 0.784
cassava6928.valid.m1 Manihot esculenta cassava6928.valid.m1 I 0.784
Ca_07170 Cicer arietinum Ca_07170 I 0.784
Ca_10901 Cicer arietinum Ca_10901 I 0.784
Ca_17971 Cicer arietinum Ca_17971 I 0.784
chr1.CM0009.80.nd Lotus japonicus chr1.CM0009.80.nd I 0.784
Ciclev10001081m.g Citrus clementina Ciclev10001081m.g I 0.784
Ciclev10005080m.g Citrus clementina Ciclev10005080m.g I 0.784
Cla002918 Citrullus lanatus Cla002918 I 0.784
Cla010092 Citrullus lanatus Cla010092 I 0.784
Cla022393 Citrullus lanatus Cla022393 I 0.784
Cucsa.005120 Cucumis sativus Cucsa.005120 I 0.784
Cucsa.307820 Cucumis sativus Cucsa.307820 I 0.784
Cucsa.337740 Cucumis sativus Cucsa.337740 I 0.784
Eucgr.A02240 Eucalyptus grandis Eucgr.A02240 I 0.784
Eucgr.G03217 Eucalyptus grandis Eucgr.G03217 I 0.784
Eucgr.K01643 Eucalyptus grandis Eucgr.K01643 I 0.784
evm.TU.supercontig_1.202 Carica papaya evm.TU.supercontig_1.202 I 0.784
evm.TU.supercontig_5.165 Carica papaya evm.TU.supercontig_5.165 I 0.784
evm.TU.supercontig_847.1 Carica papaya evm.TU.supercontig_847.1 I 0.784
gene21882-v1.0-hybrid Fragaria vesca gene21882-v1.0-hybrid I 0.784
GLYMA03G28320 Glycine max GLYMA03G28320 I 0.784
GLYMA13G26280 Glycine max GLYMA13G26280 I 0.784
GLYMA15G37220 Glycine max GLYMA15G37220 I 0.784
GLYMA19G31050 Glycine max GLYMA19G31050 I 0.784
GLYMA20G39050 Glycine max GLYMA20G39050 I 0.784
Gorai.007G352600 Gossypium raimondii Gorai.007G352600 I 0.784
Gorai.008G185000 Gossypium raimondii Gorai.008G185000 I 0.784
Gorai.011G217200 Gossypium raimondii Gorai.011G217200 I 0.784
Gorai.013G001700 Gossypium raimondii Gorai.013G001700 I 0.784
Gorai.013G081100 Gossypium raimondii Gorai.013G081100 I 0.784
GRMZM2G019907 Zea mays GRMZM2G019907 I 0.787
GRMZM2G030280 Zea mays GRMZM2G030280 I 0.784
GRMZM2G125243 Zea mays GRMZM2G125243 I 0.787
GSMUA_Achr10G00340_001 Musa acuminata GSMUA_Achr10G00340_001 I 0.784
GSMUA_Achr11G25140_001 Musa acuminata GSMUA_Achr11G25140_001 I 0.784
GSMUA_Achr3G11150_001 Musa acuminata GSMUA_Achr3G11150_001 I 0.785
GSMUA_Achr3G25020_001 Musa acuminata GSMUA_Achr3G25020_001 I 0.784
GSMUA_Achr8G05800_001 Musa acuminata GSMUA_Achr8G05800_001 I 0.784
HBP1B_WHEAT Triticum aestivum HBP1B_WHEAT D 0.784
LPERR01G10700 Leersia perrieri LPERR01G10700 I 0.784
LPERR01G29770 Leersia perrieri LPERR01G29770 I 0.805
Lus10008658.g Linum usitatissimum Lus10008658.g I 0.784
Lus10024140.g Linum usitatissimum Lus10024140.g I 0.784
Lus10026166.g Linum usitatissimum Lus10026166.g I 0.784
MDP0000262210 Malus domestica MDP0000262210 I 0.784
MDP0000300532 Malus domestica MDP0000300532 I 0.784
MDP0000320524 Malus domestica MDP0000320524 I 0.784
MDP0000536881 Malus domestica MDP0000536881 I 0.784
mgf005858m Mimulus guttatus mgf005858m I 0.784
MTR_7g089800 Medicago truncatula MTR_7g089800 I 0.784
MTR_8g040120 Medicago truncatula MTR_8g040120 I 0.784
OB01G21470 Oryza brachyantha OB01G21470 I 0.784
OB01G43330 Oryza brachyantha OB01G43330 I 0.787
OBART01G11380 Oryza barthii OBART01G11380 I 0.784
OBART01G34430 Oryza barthii OBART01G34430 I 0.782
OBF5 Arabidopsis lyrata fgenesh2_kg.6__648__AT5G06960.1 I 0.784
OGLUM01G20660 Oryza glumaepatula OGLUM01G20660 I 0.782
OLONG_020675 Oryza longistaminata OLONG_020675 I 0.782
OMERI01G31730 Oryza meridionalis OMERI01G31730 I 0.782
ONIVA01G13810 Oryza nivara ONIVA01G13810 I 0.784
ONIVA01G39320 Oryza nivara ONIVA01G39320 I 0.782
OPUNC01G11270 Oryza punctata OPUNC01G11270 I 0.784
OPUNC01G33450 Oryza punctata OPUNC01G33450 I 0.782
orange1.1g015258m.g Citrus sinensis orange1.1g015258m.g I 0.784
orange1.1g045786m.g Citrus sinensis orange1.1g045786m.g I 0.784
ORUFI01G12420 Oryza rufipogon ORUFI01G12420 I 0.784
ORUFI01G37800 Oryza rufipogon ORUFI01G37800 I 0.782
OS01G0808100 Oryza sativa OS01G0808100 I 0.782
PAN Populus trichocarpa POPTR_0008s11710 I 0.784
PAN Vitis vinifera VIT_01s0011g03230 I 0.784
Pavir.Eb01160 Panicum virgatum Pavir.Eb01160 I 0.784
Pavir.Eb03507 Panicum virgatum Pavir.Eb03507 I 0.787
PGSC0003DMG400009449 Solanum tuberosum PGSC0003DMG400009449 I 0.784
PK09021.1 Cannabis sativa PK09021.1 D 0.784
PK13754.1 Cannabis sativa PK13754.1 I 0.784
Pm016643 Prunus mume Pm016643 I 0.784
Pm028917 Prunus mume Pm028917 I 0.784
POPTR_0001s06700 Populus trichocarpa POPTR_0001s06700 I 0.784
POPTR_0006s03720 Populus trichocarpa POPTR_0006s03720 I 0.784
POPTR_0016s03590 Populus trichocarpa POPTR_0016s03590 I 0.784
PRUPE_ppa005279mg Prunus persica PRUPE_ppa005279mg I 0.784
SapurV1A.0079s0330 Salix purpurea SapurV1A.0079s0330 I 0.784
SapurV1A.0189s0240 Salix purpurea SapurV1A.0189s0240 I 0.784
SapurV1A.0196s0260 Salix purpurea SapurV1A.0196s0260 I 0.784
Sb03g006790 Sorghum bicolor Sb03g006790 I 0.784
Sb03g037560 Sorghum bicolor Sb03g037560 I 0.787
Si001292m.g Setaria italica Si001292m.g I 0.787
Si002195m.g Setaria italica Si002195m.g I 0.784
Solyc11g064950.1 Solanum lycopersicum Solyc11g064950.1 I 0.784
TCM_011845 Theobroma cacao TCM_011845 I 0.784
TCM_023491 Theobroma cacao TCM_023491 I 0.784
TCM_023492 Theobroma cacao TCM_023492 I 0.784
TGA2 Arabidopsis thaliana AT5G06950 D 0.784
TGA2.3 Oryza sativa OS01G0279900 I 0.784
TGA5 Arabidopsis thaliana AT5G06960 D 0.784
TGA6 Arabidopsis thaliana AT3G12250 D 0.784
TGA6 Arabidopsis lyrata fgenesh2_kg.3__1288__AT3G12250.4 I 0.784
Thhalv10014082m.g Eutrema salsugineum Thhalv10014082m.g I 0.784
Thhalv10021187m.g Eutrema salsugineum Thhalv10021187m.g I 0.784
TRAES3BF003000030CFD_g Triticum aestivum TRAES3BF003000030CFD_g I 0.784
VIT_08s0007g05170 Vitis vinifera VIT_08s0007g05170 I 0.784
VIT_13s0084g00660 Vitis vinifera VIT_13s0084g00660 I 0.784