Bo1g067420 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo1g067420 T081702_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.826 0.891
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.793 0.870
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.771 0.717
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.771 0.717
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.762 0.761
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.761 0.761
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.761 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g067420.1 C2H2 ZF 49 71
Bo1g067420.1 C2H2 ZF 98 120

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

276 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R005902 Calypte anna Aan_R005902 N
Afo_R008962 Aptenodytes forsteri Afo_R008962 N
Alligator_sinensis_CCG010998.1 Alligator sinensis Alligator_sinensis_CCG010998.1 N
Brh_R012570 Buceros rhinoceros Brh_R012570 N
Cmyd_10004499 Chelonia mydas Cmyd_10004499 N
ENSAMEG00000009982 Ailuropoda melanoleuca ENSAMEG00000009982 N
ENSAPLG00000003161 Anas platyrhynchos ENSAPLG00000003161 N
ENSBTAP00000026370-D1 Bos grunniens ENSBTAP00000026370-D1 N
ENSCSAG00000000939 Chlorocebus sabaeus ENSCSAG00000000939 N
ENSFALG00000000490 Ficedula albicollis ENSFALG00000000490 N
ENSMEUG00000004978 Macropus eugenii ENSMEUG00000004978 N
ENSMLUG00000012056 Myotis lucifugus ENSMLUG00000012056 N
ENSMLUG00000027396 Myotis lucifugus ENSMLUG00000027396 N
ENSMPUG00000015840 Mustela putorius furo ENSMPUG00000015840 N
ENSNLEG00000008898 Nomascus leucogenys ENSNLEG00000008898 N
ENSOARG00000006636 Ovis aries ENSOARG00000006636 N
ENSONIG00000003513 Oreochromis niloticus ENSONIG00000003513 N
ENSP00000288955 Macaca fascicularis ENSP00000288955 N
ENSPANG00000024748 Papio anubis ENSPANG00000024748 N
ENSPPYG00000001721 Pongo abelii ENSPPYG00000001721 N
ENSPSIG00000016215 Pelodiscus sinensis ENSPSIG00000016215 N
ENSSHAG00000008311 Sarcophilus harrisii ENSSHAG00000008311 N
ENSSTOG00000019842 Ictidomys tridecemlineatus ENSSTOG00000019842 I
Gfo_R011603 Geospiza fortis Gfo_R011603 N
grhl1 Danio rerio ENSDARG00000061391 I
GRHL3 Taeniopygia guttata ENSTGUG00000001153 N
GRHL3 Pan troglodytes ENSPTRG00000000344 N
GRHL3 Pteropus vampyrus ENSPVAG00000005827 N
Grhl3 Rattus norvegicus ENSRNOG00000029427 N
GRHL3 Sus scrofa ENSSSCG00000003539 N
GRHL3 Gallus gallus ENSGALG00000004249 N
GRHL3 Tursiops truncatus ENSTTRG00000016160 N
GRHL3 Cavia porcellus ENSCPOG00000008841 N
GRHL3 Callithrix jacchus ENSCJAG00000020858 N
GRHL3 Choloepus hoffmanni ENSCHOG00000000305 N
GRHL3 Canis familiaris ENSCAFG00000012994 N
GRHL3 Bos taurus ENSBTAG00000019791 N
grhl3 Xenopus tropicalis XB-GENE-919797 N
GRHL3 Ochotona princeps ENSOPRG00000003928 N
GRHL3 Homo sapiens ENSG00000158055 N
GRHL3 Gorilla gorilla ENSGGOG00000001792 N
GRHL3 Loxodonta africana ENSLAFG00000001618 N
GRHL3 Felis catus ENSFCAG00000019048 N
GRHL3 Meleagris gallopavo ENSMGAG00000005903 N
GRHL3 Microcebus murinus ENSMICG00000000542 N
GRHL3 Echinops telfairi ENSETEG00000001594 N
GRHL3 Equus caballus ENSECAG00000009866 N
GRHL3 Macaca mulatta ENSMMUG00000004463 N
GRHL3 Monodelphis domestica ENSMODG00000013064 N
Grhl3 Dipodomys ordii ENSDORG00000001381 N
Grhl3 Mus musculus ENSMUSG00000037188 N
GRHL3 Dasypus novemcinctus ENSDNOG00000013939 N
GRHL3 Ornithorhynchus anatinus ENSOANG00000002207 N
GRHL3 Anolis carolinensis ENSACAG00000017262 N
GRHL3 Oryctolagus cuniculus ENSOCUG00000013357 N
GRHL3 Otolemur garnettii ENSOGAG00000011027 N
GRHL3 Procavia capensis ENSPCAG00000011355 N
grhl3.L Xenopus laevis XB-GENE-919808 N
grhl3.S Xenopus laevis XB-GENE-17342846 N
Myotis_brandtii_Grhl3_10029711 Myotis brandtii Myotis_brandtii_Grhl3_10029711 N
Pvit_10773 Pogona vitticeps Pvit_10773 N
Tal_R005479 Tyto alba Tal_R005479 N