Bo1g113530 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo1g113530 T081705_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.822 0.935
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.803 0.870
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.799 0.761
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.799 0.739
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.796 0.826
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.796 0.826
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.796 0.826
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.804
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.804
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.776 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g113530.1 C2H2 ZF 102 124
Bo1g113530.1 C2H2 ZF 157 179

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_03014 Capronia coronata A1O1_03014 N 0.000
A1O3_02022 Capronia epimyces A1O3_02022 N 0.000
A1O5_03401 Cladophialophora psammophila A1O5_03401 N 0.000
A1O7_04426 Cladophialophora yegresii A1O7_04426 N 0.000
A1O9_10147 Exophiala aquamarina A1O9_10147 N 0.000
G647_04266 Cladophialophora carrionii G647_04266 N 0.000
HMPREF1120_06645 Exophiala dermatitidis HMPREF1120_06645 N 0.000
PV04_04857 Capronia semiimmersa PV04_04857 N 0.000
PV05_01527 Exophiala xenobiotica PV05_01527 N 0.000
PV07_07712 Cladophialophora immunda PV07_07712 N 0.000
PV08_10605 Exophiala spinifera PV08_10605 N 0.000
PV10_00046 Exophiala mesophila PV10_00046 N 0.000
Z517_12027 Fonsecaea pedrosoi Z517_12027 N 0.000
Z518_10049 Rhinocladiella mackenziei Z518_10049 N 0.000