Bo4g069230 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo4g069230 T081738_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.787 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.786 0.783
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.786 0.783
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.776 0.804
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.771 0.761
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.771 0.761
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.767 0.826
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.756 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.756 0.717
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.756 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g069230.1 C2H2 ZF 33 55
Bo4g069230.1 C2H2 ZF 77 99

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

343 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_08547 Capronia coronata A1O1_08547 N
A1O3_08068 Capronia epimyces A1O3_08068 N
A1O5_00064 Cladophialophora psammophila A1O5_00064 N
A1O9_02971 Exophiala aquamarina A1O9_02971 N
ACLA_019170 Aspergillus clavatus CADACLAG00001733 N
CORT_0A02680 Candida orthopsilosis CORT_0A02680 I
CPAG_01303 Candida parapsilosis CPAG_01303 I
G647_04751 Cladophialophora carrionii G647_04751 N
HMPREF1120_04740 Exophiala dermatitidis HMPREF1120_04740 N
HMPREF1120_06644 Exophiala dermatitidis HMPREF1120_06644 N
HMPREF1120_08639 Exophiala dermatitidis HMPREF1120_08639 N
LELG_00217 Lodderomyces elongisporus LELG_00217 I
NFIA_009030 Neosartorya fischeri CADNFIAG00001492 N
NFIA_062430 Neosartorya fischeri CADNFIAG00006157 N
OCS_01338 Ophiocordyceps sinensis OCS_01338 N
PV04_03823 Capronia semiimmersa PV04_03823 N
PV05_01169 Exophiala xenobiotica PV05_01169 N
PV05_01526 Exophiala xenobiotica PV05_01526 N
PV06_11438 Exophiala oligosperma PV06_11438 N
PV06_11458 Exophiala oligosperma PV06_11458 N
PV07_06472 Cladophialophora immunda PV07_06472 N
PV08_04520 Exophiala spinifera PV08_04520 N
PV10_00045 Exophiala mesophila PV10_00045 N
PV11_04261 Exophiala sideris PV11_04261 N
PVAR5_2573 Byssochlamys spectabilis PVAR5_2573 N
SEPMUDRAFT_147149 Sphaerulina musiva SEPMUDRAFT_147149 N
Z517_12026 Fonsecaea pedrosoi Z517_12026 N
Z518_01646 Rhinocladiella mackenziei Z518_01646 N
Z518_10050 Rhinocladiella mackenziei Z518_10050 N
Z519_00063 Cladophialophora bantiana Z519_00063 N