Bra017188 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra017188 T081918_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.795 0.761
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.761
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.761
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.793 0.848
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.793 0.848
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.775 0.717
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.772 0.804
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.761 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra017188.1-P C2H2 ZF 49 71
Bra017188.1-P C2H2 ZF 95 117

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

382 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_09159 Capronia coronata A1O1_09159 I 0.000
A1O3_04845 Capronia epimyces A1O3_04845 I 0.000
A1O5_10900 Cladophialophora psammophila A1O5_10900 I 0.000
A1O7_09067 Cladophialophora yegresii A1O7_09067 I 0.000
A1O9_08529 Exophiala aquamarina A1O9_08529 I 0.000
ACRE_046280 Acremonium chrysogenum ACRE_046280 I 0.000
BAUCODRAFT_39053 Baudoinia compniacensis BAUCODRAFT_39053 I 0.000
BBA_06883 Beauveria bassiana BBA_06883 I 0.000
Bcin12g04500 Botrytis cinerea Bcin12g04500 I 0.000
BDDG_06646 Blastomyces dermatitidis BDDG_06646 I 0.000
CADAFLAG00008989 Aspergillus flavus CADAFLAG00008989 I 0.000
CADANGAG00013867 Aspergillus niger CADANGAG00013867 I 0.000
CCM_02994 Cordyceps militaris CCM_02994 I 0.000
CFIO01_00183 Colletotrichum fioriniae CFIO01_00183 I 0.000
CGGC5_14397 Colletotrichum gloeosporioides CGGC5_14397 I 0.000
CH063_11489 Colletotrichum higginsianum CH063_11489 I 0.000
CHGG_04711 Chaetomium globosum CHGG_04711 I 0.000
CIMG_09213 Coccidioides immitis CIMG_09213 I 0.000
CMQ_2922 Grosmannia clavigera CMQ_2922 I 0.000
Cob_02846 Colletotrichum orbiculare Cob_02846 I 0.000
CPC735_016280 Coccidioides posadasii CPC735_016280 I 0.000
CPUR_05329 Claviceps purpurea CPUR_05329 I 0.000
CSUB01_05654 Colletotrichum sublineola CSUB01_05654 I 0.000
CTHT_0032940 Chaetomium thermophilum CTHT_0032940 I 0.000
DOTSEDRAFT_74135 Dothistroma septosporum DOTSEDRAFT_74135 I 0.000
EPUS_07480 Endocarpon pusillum EPUS_07480 I 0.000
estExt_Genewise1.C_31155 Mycosphaerella fijiensis estExt_Genewise1.C_31155 I 0.000
estExt_Genewise1.C_31209 Neurospora discreta estExt_Genewise1.C_31209 I 0.000
estExt_Genewise1Plus.C_chr_90305 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_90305 I 0.000
EURHEDRAFT_481352 Aspergillus ruber EURHEDRAFT_481352 I 0.000
F503_02919 Ophiostoma piceae uamh F503_02919 I 0.000
FFUJ_04567 Fusarium fujikuroi FFUJ_04567 I 0.000
fgenesh1_pg.sca_82_chr10_2_0000336 Nectria haematococca fgenesh1_pg.sca_82_chr10_2_0000336 I 0.000
FGRRES_16471_M Fusarium graminearum FGRRES_16471_M I 0.000
FOXG_06396 Fusarium oxysporum FOXG_06396 I 0.000
FPSE_07163 Fusarium pseudograminearum FPSE_07163 I 0.000
FVEG_04246 Fusarium verticillioides FVEG_04246 I 0.000
G647_08026 Cladophialophora carrionii G647_08026 I 0.000
GGTG_08450 Gaeumannomyces graminis GGTG_08450 I 0.000
GLRG_07227 Colletotrichum graminicola GLRG_07227 I 0.000
GMDG_07670 Pseudogymnoascus destructans GMDG_07670 I 0.000
GSTUM_00002283001 Tuber melanosporum GSTUM_00002283001 I 0.000
H101_04520 Trichophyton interdigitale H101_04520 I 0.000
HMPREF1120_01049 Exophiala dermatitidis HMPREF1120_01049 I 0.000
HMPREF1541_10049 Cyphellophora europaea HMPREF1541_10049 I 0.000
HMPREF1624_06090 Sporothrix schenckii HMPREF1624_06090 I 0.000
MAC_06769 Metarhizium acridum MAC_06769 I 0.000
MAJ_02884 Metarhizium majus MAJ_02884 I 0.000
MAM_04298 Metarhizium album MAM_04298 I 0.000
MANI_017308 Metarhizium anisopliae MANI_017308 I 0.000
MAPG_05250 Magnaporthe poae MAPG_05250 I 0.000
MBM_00857 Marssonina brunnea MBM_00857 I 0.000
MBR_01966 Metarhizium brunneum MBR_01966 I 0.000
MCYG_05152 Microsporum canis MCYG_05152 I 0.000
MGG_01518 Magnaporthe oryzae MGG_01518 I 0.000
MGU_02647 Metarhizium guizhouense MGU_02647 I 0.000
MGYG_06191 Microsporum gypseum MGYG_06191 I 0.000
MYCFIDRAFT_95405 Pseudocercospora fijiensis MYCFIDRAFT_95405 I 0.000
Mycgr3G75413 Zymoseptoria tritici Mycgr3G75413 I 0.000
MYCTH_2298994 Myceliophthora thermophila MYCTH_2298994 I 0.000
NechaG85733 Fusarium solani NechaG85733 I 0.000
NEUTE1DRAFT_78894 Neurospora tetrasperma NEUTE1DRAFT_78894 I 0.000
nirA Aspergillus nidulans CADANIAG00002651 D 0.000
nit-4 Neurospora crassa NCU08294 D 0.000
OCS_03410 Ophiocordyceps sinensis OCS_03410 I 0.000
OIDMADRAFT_145878 Oidiodendron maius OIDMADRAFT_145878 I 0.000
PAAG_02447 Paracoccidioides sp lutzii PAAG_02447 I 0.000
PABG_04941 Paracoccidioides brasiliensis PABG_04941 I 0.000
PDE_07492 Penicillium oxalicum PDE_07492 I 0.000
PFICI_05113 Pestalotiopsis fici PFICI_05113 I 0.000
PMAA_031240 Talaromyces marneffei PMAA_031240 I 0.000
PMAA_031240 Penicillium marneffei PMAA_031240 I 0.000
PODANS_6_3660 Podospora anserina PODANS_6_3660 I 0.000
PV04_09653 Capronia semiimmersa PV04_09653 I 0.000
PV05_00256 Exophiala xenobiotica PV05_00256 I 0.000
PV06_07400 Exophiala oligosperma PV06_07400 I 0.000
PV08_01595 Exophiala spinifera PV08_01595 I 0.000
PV09_06735 Verruconis gallopava PV09_06735 I 0.000
PV10_04668 Exophiala mesophila PV10_04668 I 0.000
PV11_03250 Exophiala sideris PV11_03250 I 0.000
S40285_05835 Stachybotrys chlorohalonata S40285_05835 I 0.000
S40288_02558 Stachybotrys chartarum S40288_02558 I 0.000
SAPIO_CDS7494 Scedosporium apiospermum SAPIO_CDS7494 I 0.000
SBOR_1902 Sclerotinia borealis SBOR_1902 I 0.000
SEPMUDRAFT_151303 Sphaerulina musiva SEPMUDRAFT_151303 I 0.000
SMAC_00922 Sordaria macrospora SMAC_00922 I 0.000
SPBR_00474 Sporothrix brasiliensis SPBR_00474 I 0.000
SS1G_08630 Sclerotinia sclerotiorum SS1G_08630 I 0.000
TEQG_04623 Trichophyton equinum TEQG_04623 I 0.000
TESG_03837 Trichophyton tonsurans TESG_03837 I 0.000
THITE_2115412 Thielavia terrestris THITE_2115412 I 0.000
TRIREDRAFT_62787 Trichoderma reesei TRIREDRAFT_62787 I 0.000
TSTA_066900 Talaromyces stipitatus TSTA_066900 I 0.000
UCRPA7_467 Togninia minima UCRPA7_467 I 0.000
V499_08062 Pseudogymnoascus pannorum V499_08062 I 0.000
VDAG_08005 Verticillium dahliae VDAG_08005 I 0.000
VDBG_01257 Verticillium albo atrum VDBG_01257 I 0.000
VDBG_01257 Verticillium alfalfae VDBG_01257 I 0.000
VHEMI00532 Torrubiella hemipterigena VHEMI00532 I 0.000
X797_005996 Metarhizium robertsii X797_005996 I 0.000
Z517_01923 Fonsecaea pedrosoi Z517_01923 I 0.000
Z518_03222 Rhinocladiella mackenziei Z518_03222 I 0.000
Z519_11440 Cladophialophora bantiana Z519_11440 I 0.000