Bra022436 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra022436 T081934_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.822 0.935
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.803 0.870
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.799 0.739
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.799 0.739
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.796 0.804
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.796 0.804
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.796 0.804
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.783
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.783
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.776 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra022436.1-P C2H2 ZF 102 124
Bra022436.1-P C2H2 ZF 159 181

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_00440 Capronia coronata A1O1_00440 I 0.000
A1O5_03789 Cladophialophora psammophila A1O5_03789 I 0.000
A1O7_00422 Cladophialophora yegresii A1O7_00422 I 0.000
A1O9_01459 Exophiala aquamarina A1O9_01459 I 0.000
BAUCODRAFT_119725 Baudoinia compniacensis BAUCODRAFT_119725 I 0.000
Bcin01g06300 Botrytis cinerea Bcin01g06300 I 0.000
BDDG_00695 Blastomyces dermatitidis BDDG_00695 I 0.000
BGHDH14_bgh02178 Blumeria graminis BGHDH14_bgh02178 I 0.000
CFIO01_12884 Colletotrichum fioriniae CFIO01_12884 I 0.000
CGGC5_6423 Colletotrichum gloeosporioides CGGC5_6423 I 0.000
CH063_10875 Colletotrichum higginsianum CH063_10875 I 0.000
CHGG_05934 Chaetomium globosum CHGG_05934 I 0.000
CIMG_01041 Coccidioides immitis CIMG_01041 I 0.000
Cob_08038 Colletotrichum orbiculare Cob_08038 I 0.000
COCC4DRAFT_62452 Bipolaris maydis COCC4DRAFT_62452 I 0.000
COCCADRAFT_21472 Bipolaris zeicola COCCADRAFT_21472 I 0.000
COCMIDRAFT_23818 Bipolaris oryzae COCMIDRAFT_23818 I 0.000
COCSADRAFT_276273 Bipolaris sorokiniana COCSADRAFT_276273 I 0.000
COCVIDRAFT_38721 Bipolaris victoriae COCVIDRAFT_38721 I 0.000
CPC735_053190 Coccidioides posadasii CPC735_053190 I 0.000
CSUB01_11791 Colletotrichum sublineola CSUB01_11791 I 0.000
DOTSEDRAFT_74982 Dothistroma septosporum DOTSEDRAFT_74982 I 0.000
estExt_fgenesh1_pg.C_50728 Cryphonectria parasitica estExt_fgenesh1_pg.C_50728 I 0.000
estExt_Genewise1Plus.C_100794 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_100794 I 0.000
estExt_Genewise1Plus.C_380118 Mycosphaerella fijiensis estExt_Genewise1Plus.C_380118 I 0.000
e_gw1.11.537.1 Mycosphaerella graminicola e_gw1.11.537.1 I 0.000
F503_02611 Ophiostoma piceae uamh F503_02611 I 0.000
GGTG_01991 Gaeumannomyces graminis GGTG_01991 I 0.000
GLRG_04444 Colletotrichum graminicola GLRG_04444 I 0.000
GMDG_04728 Pseudogymnoascus destructans GMDG_04728 I 0.000
HCBG_00900 Histoplasma capsulatum HCBG_00900 D 0.000
HMPREF1120_06024 Exophiala dermatitidis HMPREF1120_06024 I 0.000
HMPREF1541_05909 Cyphellophora europaea HMPREF1541_05909 I 0.000
M437DRAFT_14468 Aureobasidium melanogenum M437DRAFT_14468 I 0.000
M438DRAFT_31288 Aureobasidium pullulans M438DRAFT_31288 I 0.000
MAPG_06349 Magnaporthe poae MAPG_06349 I 0.000
MBM_02592 Marssonina brunnea MBM_02592 I 0.000
MGG_04729 Magnaporthe oryzae MGG_04729 I 0.000
MYCFIDRAFT_60981 Pseudocercospora fijiensis MYCFIDRAFT_60981 I 0.000
Mycgr3G49965 Zymoseptoria tritici Mycgr3G49965 I 0.000
MYCTH_77476 Myceliophthora thermophila MYCTH_77476 I 0.000
OIDMADRAFT_117495 Oidiodendron maius OIDMADRAFT_117495 I 0.000
PAAG_01064 Paracoccidioides sp lutzii PAAG_01064 I 0.000
PABG_01647 Paracoccidioides brasiliensis PABG_01647 I 0.000
PFICI_02022 Pestalotiopsis fici PFICI_02022 I 0.000
PTT_18239 Pyrenophora teres PTT_18239 I 0.000
PV04_01647 Capronia semiimmersa PV04_01647 I 0.000
PV05_11407 Exophiala xenobiotica PV05_11407 I 0.000
PV06_03201 Exophiala oligosperma PV06_03201 I 0.000
PV07_10272 Cladophialophora immunda PV07_10272 I 0.000
PV08_05635 Exophiala spinifera PV08_05635 I 0.000
PV10_06256 Exophiala mesophila PV10_06256 I 0.000
PV11_07704 Exophiala sideris PV11_07704 I 0.000
SAPIO_CDS3166 Scedosporium apiospermum SAPIO_CDS3166 I 0.000
SBOR_1325 Sclerotinia borealis SBOR_1325 I 0.000
SEPMUDRAFT_52418 Sphaerulina musiva SEPMUDRAFT_52418 I 0.000
SETTUDRAFT_103803 Setosphaeria turcica SETTUDRAFT_103803 I 0.000
THITE_2112431 Thielavia terrestris THITE_2112431 I 0.000
UCREL1_7924 Eutypa lata UCREL1_7924 I 0.000
UCRPA7_6713 Togninia minima UCRPA7_6713 I 0.000
V499_08165 Pseudogymnoascus pannorum V499_08165 I 0.000
Z517_08474 Fonsecaea pedrosoi Z517_08474 I 0.000
Z518_03932 Rhinocladiella mackenziei Z518_03932 I 0.000
Z519_03111 Cladophialophora bantiana Z519_03111 I 0.000