Bra036098 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra036098 T081969_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IDD1
M06824_2.00 		Arabidopsis thaliana
DNTTTTGTCKTTTWBYD
HRVWAAAMGACAAAANH		 Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a 		0.773 0.907
IDD1
M06825_2.00 		Arabidopsis thaliana
WDTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAHW		 Dap-seq
OMalley et al.(2016)
At5g66730_col 		0.773 0.907
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra036098.1-P C2H2 ZF 138 159
Bra036098.1-P C2H2 ZF 158 184

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29794.m003304 Ricinus communis 29794.m003304 I 0.773
AtIDD2 Arabidopsis lyrata fgenesh2_kg.5__1410__AT3G50700.1 I 0.778
BGIOSGA008789 Oryza indica BGIOSGA008789 I 0.778
BGIOSGA016934 Oryza indica BGIOSGA016934 I 0.778
Bo3g129830 Brassica oleracea Bo3g129830 I 0.778
Bo8g080100 Brassica oleracea Bo8g080100 I 0.827
Bostr.0568s0090 Boechera stricta Bostr.0568s0090 I 0.773
Bostr.6864s0177 Boechera stricta Bostr.6864s0177 I 0.778
Bra037151 Brassica rapa Bra037151 I 0.773
BRADI2G41550 Brachypodium distachyon BRADI2G41550 I 0.778
BRADI3G51090 Brachypodium distachyon BRADI3G51090 I 0.773
BRADI5G18530 Brachypodium distachyon BRADI5G18530 I 0.778
Cagra.0926s0031 Capsella grandiflora Cagra.0926s0031 I 0.778
Cagra.2007s0026 Capsella grandiflora Cagra.2007s0026 I 0.773
Carubv10017209m.g Capsella rubella Carubv10017209m.g I 0.778
Carubv10026275m.g Capsella rubella Carubv10026275m.g I 0.773
cassava29681.valid.m1 Manihot esculenta cassava29681.valid.m1 I 0.778
cassava42858.valid.m1 Manihot esculenta cassava42858.valid.m1 I 0.778
Ca_03678 Cicer arietinum Ca_03678 I 0.778
Ciclev10007837m.g Citrus clementina Ciclev10007837m.g I 0.772
Cla014416 Citrullus lanatus Cla014416 I 0.778
Cla014763 Citrullus lanatus Cla014763 I 0.773
Cla015825 Citrullus lanatus Cla015825 I 0.778
Cucsa.163800 Cucumis sativus Cucsa.163800 I 0.778
Cucsa.190800 Cucumis sativus Cucsa.190800 I 0.778
Cucsa.201280 Cucumis sativus Cucsa.201280 I 0.773
Eucgr.B02626 Eucalyptus grandis Eucgr.B02626 I 0.773
Eucgr.I02463 Eucalyptus grandis Eucgr.I02463 I 0.778
Eucgr.J02851 Eucalyptus grandis Eucgr.J02851 I 0.773
evm.TU.supercontig_158.1 Carica papaya evm.TU.supercontig_158.1 I 0.778
F775_28900 Aegilops tauschii F775_28900 I 0.778
fgenesh2_kg.8__2743__AT5G66730.1 Arabidopsis lyrata fgenesh2_kg.8__2743__AT5G66730.1 I 0.773
gene02702-v1.0-hybrid Fragaria vesca gene02702-v1.0-hybrid I 0.773
gene29562-v1.0-hybrid Fragaria vesca gene29562-v1.0-hybrid I 0.778
GLYMA01G38290 Glycine max GLYMA01G38290 I 0.778
GLYMA03G39650 Glycine max GLYMA03G39650 I 0.773
GLYMA10G29390 Glycine max GLYMA10G29390 I 0.778
GLYMA17G34601 Glycine max GLYMA17G34601 I 0.778
GLYMA19G42280 Glycine max GLYMA19G42280 I 0.773
GLYMA20G37900 Glycine max GLYMA20G37900 I 0.778
Gorai.003G016200 Gossypium raimondii Gorai.003G016200 I 0.778
Gorai.003G016300 Gossypium raimondii Gorai.003G016300 I 0.778
Gorai.007G205300 Gossypium raimondii Gorai.007G205300 I 0.778
Gorai.010G099600 Gossypium raimondii Gorai.010G099600 I 0.773
GRMZM2G027333 Zea mays GRMZM2G027333 I 0.778
GRMZM2G129261 Zea mays GRMZM2G129261 I 0.778
GRMZM2G177693 Zea mays GRMZM2G177693 I 0.778
GRMZM5G884137 Zea mays GRMZM5G884137 I 0.778
GSMUA_Achr10G07180_001 Musa acuminata GSMUA_Achr10G07180_001 I 0.778
GSMUA_Achr10G21260_001 Musa acuminata GSMUA_Achr10G21260_001 I 0.778
GSMUA_Achr11G07460_001 Musa acuminata GSMUA_Achr11G07460_001 I 0.778
GSMUA_Achr1G02080_001 Musa acuminata GSMUA_Achr1G02080_001 I 0.778
GSMUA_Achr1G07110_001 Musa acuminata GSMUA_Achr1G07110_001 I 0.778
GSMUA_Achr2G16690_001 Musa acuminata GSMUA_Achr2G16690_001 I 0.767
GSMUA_Achr4G04310_001 Musa acuminata GSMUA_Achr4G04310_001 I 0.778
GSMUA_Achr4G07200_001 Musa acuminata GSMUA_Achr4G07200_001 I 0.768
GSMUA_Achr5G06450_001 Musa acuminata GSMUA_Achr5G06450_001 I 0.778
GSMUA_Achr5G22140_001 Musa acuminata GSMUA_Achr5G22140_001 I 0.773
GSMUA_Achr7G13540_001 Musa acuminata GSMUA_Achr7G13540_001 I 0.773
GSMUA_Achr8G10040_001 Musa acuminata GSMUA_Achr8G10040_001 I 0.797
GSMUA_AchrUn_randomG09270_001 Musa acuminata GSMUA_AchrUn_randomG09270_001 I 0.772
IDD1 Arabidopsis thaliana AT5G66730 D 0.773
LPERR01G17290 Leersia perrieri LPERR01G17290 I 0.778
LPERR02G22320 Leersia perrieri LPERR02G22320 I 0.778
LPERR04G17920 Leersia perrieri LPERR04G17920 I 0.773
Lus10041723.g Linum usitatissimum Lus10041723.g I 0.778
MDP0000137126 Malus domestica MDP0000137126 I 0.778
mgf003280m Mimulus guttatus mgf003280m I 0.778
mgf006239m Mimulus guttatus mgf006239m I 0.778
MLOC_56120 Hordeum vulgare MLOC_56120 I 0.778
MLOC_57518 Hordeum vulgare MLOC_57518 I 0.778
MLOC_60958 Hordeum vulgare MLOC_60958 I 0.773
MTR_1g016010 Medicago truncatula MTR_1g016010 I 0.773
OB02G34800 Oryza brachyantha OB02G34800 I 0.778
OBART01G20150 Oryza barthii OBART01G20150 I 0.778
OBART04G21910 Oryza barthii OBART04G21910 I 0.778
OGLUM01G23770 Oryza glumaepatula OGLUM01G23770 I 0.778
OGLUM02G28000 Oryza glumaepatula OGLUM02G28000 I 0.778
OGLUM04G21940 Oryza glumaepatula OGLUM04G21940 I 0.778
OMERI01G18610 Oryza meridionalis OMERI01G18610 I 0.778
OMERI02G26740 Oryza meridionalis OMERI02G26740 I 0.778
ONIVA01G22710 Oryza nivara ONIVA01G22710 I 0.778
ONIVA02G30280 Oryza nivara ONIVA02G30280 I 0.778
ONIVA04G20460 Oryza nivara ONIVA04G20460 I 0.778
OPUNC01G20510 Oryza punctata OPUNC01G20510 I 0.778
OPUNC02G25110 Oryza punctata OPUNC02G25110 I 0.778
OPUNC03G06880 Oryza punctata OPUNC03G06880 I 0.778
OPUNC04G19640 Oryza punctata OPUNC04G19640 I 0.778
orange1.1g008017m.g Citrus sinensis orange1.1g008017m.g I 0.772
ORGLA02G0236400 Oryza glaberrima ORGLA02G0236400 I 0.778
ORUFI01G22710 Oryza rufipogon ORUFI01G22710 I 0.778
ORUFI02G28900 Oryza rufipogon ORUFI02G28900 I 0.778
ORUFI04G23520 Oryza rufipogon ORUFI04G23520 I 0.778
OS01G0572300 Oryza sativa OS01G0572300 I 0.778
OS02G0672100 Oryza sativa OS02G0672100 I 0.778
OS04G0566400 Oryza sativa OS04G0566400 I 0.778
Pavir.Ga01013 Panicum virgatum Pavir.Ga01013 I 0.778
Pavir.Gb01057 Panicum virgatum Pavir.Gb01057 I 0.778
PGSC0003DMG400008205 Solanum tuberosum PGSC0003DMG400008205 I 0.773
PGSC0003DMG400012684 Solanum tuberosum PGSC0003DMG400012684 I 0.778
PK02322.1 Cannabis sativa PK02322.1 I 0.778
PK15161.1 Cannabis sativa PK15161.1 I 0.773
Pm005517 Prunus mume Pm005517 I 0.773
Pm026593 Prunus mume Pm026593 I 0.778
POPTR_0005s12710 Populus trichocarpa POPTR_0005s12710 I 0.778
POPTR_0006s24410 Populus trichocarpa POPTR_0006s24410 I 0.773
PRUPE_ppa004299mg Prunus persica PRUPE_ppa004299mg I 0.778
PRUPE_ppa004359mg Prunus persica PRUPE_ppa004359mg I 0.773
SapurV1A.0086s0480 Salix purpurea SapurV1A.0086s0480 I 0.773
SapurV1A.0255s0120 Salix purpurea SapurV1A.0255s0120 I 0.778
SapurV1A.0817s0050 Salix purpurea SapurV1A.0817s0050 I 0.778
SapurV1A.3093s0010 Salix purpurea SapurV1A.3093s0010 I 0.778
Sb03g025790 Sorghum bicolor Sb03g025790 I 0.778
Sb06g025550 Sorghum bicolor Sb06g025550 I 0.778
Si001287m.g Setaria italica Si001287m.g I 0.778
Si001504m.g Setaria italica Si001504m.g I 0.778
Si009633m.g Setaria italica Si009633m.g I 0.778
Solyc08g063040.2 Solanum lycopersicum Solyc08g063040.2 I 0.773
TCM_000429 Theobroma cacao TCM_000429 I 0.778
TCM_037300 Theobroma cacao TCM_037300 I 0.773
Thhalv10004063m.g Eutrema salsugineum Thhalv10004063m.g I 0.773
Thhalv10010353m.g Eutrema salsugineum Thhalv10010353m.g I 0.807
TRAES3BF042100060CFD_g Triticum aestivum TRAES3BF042100060CFD_g I 0.778
Traes_2AL_7ABA7B7C8 Triticum aestivum Traes_2AL_7ABA7B7C8 I 0.778
Traes_2BL_58A855C7B Triticum aestivum Traes_2BL_58A855C7B I 0.778
Traes_2DL_540050272 Triticum aestivum Traes_2DL_540050272 I 0.778
Traes_3AL_35CA14632 Triticum aestivum Traes_3AL_35CA14632 I 0.778
Traes_6DL_244C908B5 Triticum aestivum Traes_6DL_244C908B5 I 0.778
TRIUR3_35215 Triticum urartu TRIUR3_35215 I 0.778
VIT_04s0008g01160 Vitis vinifera VIT_04s0008g01160 I 0.773
VIT_04s0023g01430 Vitis vinifera VIT_04s0023g01430 I 0.778
XM_002310763.1 Populus trichocarpa POPTR_0007s12520 I 0.778