PRDM4 (Anolis carolinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSACAG00000014907 T086121_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.809 0.934
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.809 0.934
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.809 0.934
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.809 0.934
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSACAP00000014668 C2H2 ZF 590 612
ENSACAP00000014668 C2H2 ZF 618 640
ENSACAP00000014668 C2H2 ZF 646 668
ENSACAP00000014668 C2H2 ZF 674 696
ENSACAP00000014668 C2H2 ZF 702 724
ENSACAP00000014668 C2H2 ZF 730 751

Links

Other C2H2 ZF family TFs
Other Anolis carolinensis TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA01G30335 Glycine max GLYMA01G30335 N
GLYMA0220S00260 Glycine max GLYMA0220S00260 N
GLYMA02G18651 Glycine max GLYMA02G18651 N
GLYMA02G34931 Glycine max GLYMA02G34931 N
GLYMA03G13213 Glycine max GLYMA03G13213 N
GLYMA03G16426 Glycine max GLYMA03G16426 N
GLYMA04G13106 Glycine max GLYMA04G13106 N
GLYMA04G17450 Glycine max GLYMA04G17450 N
GLYMA05G21551 Glycine max GLYMA05G21551 N
GLYMA08G28998 Glycine max GLYMA08G28998 N
GLYMA08G40591 Glycine max GLYMA08G40591 N
GLYMA09G00215 Glycine max GLYMA09G00215 N
GLYMA09G07461 Glycine max GLYMA09G07461 N
GLYMA09G15803 Glycine max GLYMA09G15803 N
GLYMA10G02526 Glycine max GLYMA10G02526 N
GLYMA10G11414 Glycine max GLYMA10G11414 N
GLYMA10G13201 Glycine max GLYMA10G13201 N
GLYMA10G23998 Glycine max GLYMA10G23998 N
GLYMA11G18735 Glycine max GLYMA11G18735 N
GLYMA11G21925 Glycine max GLYMA11G21925 N
GLYMA12G24176 Glycine max GLYMA12G24176 N
GLYMA13G26201 Glycine max GLYMA13G26201 N
GLYMA13G26211 Glycine max GLYMA13G26211 N
GLYMA13G33201 Glycine max GLYMA13G33201 N
GLYMA14G33053 Glycine max GLYMA14G33053 N
GLYMA15G26690 Glycine max GLYMA15G26690 N
GLYMA16G09351 Glycine max GLYMA16G09351 N
GLYMA16G19261 Glycine max GLYMA16G19261 N
GLYMA16G25948 Glycine max GLYMA16G25948 N
GLYMA17G32863 Glycine max GLYMA17G32863 N
GLYMA17G35045 Glycine max GLYMA17G35045 N
GLYMA18G11571 Glycine max GLYMA18G11571 N
GLYMA18G14116 Glycine max GLYMA18G14116 N
GLYMA18G18971 Glycine max GLYMA18G18971 N
GLYMA19G27563 Glycine max GLYMA19G27563 N
GLYMA19G42803 Glycine max GLYMA19G42803 N
GLYMA20G17531 Glycine max GLYMA20G17531 N
GLYMA20G18326 Glycine max GLYMA20G18326 N