ENSCING00000018982 (Ciona intestinalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCING00000018982 T089120_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YY1
M02877_2.00 		Homo sapiens
NVSRCCATNDH
DHNATGGYSBN		 SELEX
Jolma et al.(2013)
YY1_1 		0.761 0.912
YY1
M04406_2.00 		Homo sapiens
NDCCATYTTKRRBNDWNHGTGCK
MGCACDNWHNVYYMAARATGGHN		 SELEX
Yin et al.(2017)
YY1_FL_HT-SELEX_1 		0.761 0.912
YY1
M04407_2.00 		Homo sapiens
NKMCGCCATYTTGN
NCAARATGGCGKMN		 SELEX
Yin et al.(2017)
YY1_FL_HT-SELEX_2 		0.761 0.912
YY1
M05845_2.00 		Homo sapiens
NNNVGCCATNWYD
HRWNATGGCBNNN		 SMiLE-seq
Isakova et al.(2017)
YY1 		0.761 0.912
YY1
M08288_2.00 		Homo sapiens
GCCGCCATBKYB
VRMVATGGCGGC		 ChIP-seq
Schmitges et al.(2016)
P25490_1-4.RCADE 		0.761 0.912
YY1
M08085_2.00 		Homo sapiens
KCVGCCATBTTK
MAAVATGGCBGM		 ChIP-seq
Mathelier et al.(2014)
MA0095.2 		0.761 0.912
YY1
M07855_2.00 		Homo sapiens
VNVGCCGCCATBTTK
MAAVATGGCGGCBNB		 ChIP-seq
Gerstein et al.(2012)
GM12878_YY1_HudsonAlpha 		0.761 0.912
YY1
M07856_2.00 		Homo sapiens
GCSGCCATBTT
AAVATGGCSGC		 ChIP-seq
Gerstein et al.(2012)
GM12891_YY1_HudsonAlpha 		0.761 0.912
YY1
M07857_2.00 		Homo sapiens
BSNVGCSGCCATBTT
AAVATGGCSGCBNSV		 ChIP-seq
Gerstein et al.(2012)
GM12892_YY1_HudsonAlpha 		0.761 0.912
YY1
M07858_2.00 		Homo sapiens
NNVGCSGCCATBTTK
MAAVATGGCSGCBNN		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_YY1_HudsonAlpha 		0.761 0.912
YY1
M07859_2.00 		Homo sapiens
SBSGCSGCCATBTTK
MAAVATGGCSGCSVS		 ChIP-seq
Gerstein et al.(2012)
K562b_YY1_UCD 		0.761 0.912
YY1
M07860_2.00 		Homo sapiens
GCCGCCATBTTKNNN
NNNMAAVATGGCGGC		 ChIP-seq
Gerstein et al.(2012)
K562_YY1_HudsonAlpha 		0.761 0.912
YY1
M07861_2.00 		Homo sapiens
VGCSGCCATBTTK
MAAVATGGCSGCB		 ChIP-seq
Gerstein et al.(2012)
NT2-D1_YY1_UCD 		0.761 0.912
YY1
M08237_2.00 		Homo sapiens
VNVGCVGCCATBTTD
HAAVATGGCBGCBNB		 ChIP-seq
Najafabadi et al.(2015b)
YY1 		0.761 0.912
YY1
M08865_2.00 		Homo sapiens
GCCGCCATYTTK
MAARATGGCGGC		 Misc
Kulakovskiy et al.(2013)
TYY1_HUMAN.H11MO.0.A 		0.761 0.912
Yy1
M08971_2.00 		Mus musculus
GCCGCCATBTTB
VAAVATGGCGGC		 Misc
Kulakovskiy et al.(2013)
TYY1_MOUSE.H11MO.0.A 		0.761 0.912
YY1
M10138_2.00 		Homo sapiens
NVNNDCCATNTWNNVWN
NWBNNWANATGGHNNBN		 Transfac
Matys et al.(2006)
V$YY1_01 		0.761 0.912
YY1
M10139_2.00 		Homo sapiens
NNNSBGCCATCTDSNHTSND
HNSADNSHAGATGGCVSNNN		 Transfac
Matys et al.(2006)
V$YY1_02 		0.761 0.912
YY1
M10140_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YY1_03 		0.761 0.912
YY1
M10141_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YY1_07 		0.761 0.912
YY1
M10142_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YY1_08 		0.761 0.912
YY1
M10143_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YY1_Q4_01 		0.761 0.912
YY1
M10144_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YY1_Q6_02 		0.761 0.912
YY1
M10145_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YY1_Q6_03 		0.761 0.912
YY1
M10146_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YY1_Q6 		0.761 0.912
YY1
M04408_2.00 		Homo sapiens
NDCCATYTTKRRCDDWWHGTGCY
RGCACDWWHHGYYMAARATGGHN		 SELEX
Yin et al.(2017)
YY1_FL_Methyl-HT-SELEX_1 		0.761 0.912
YY1
M04409_2.00 		Homo sapiens
RKCSGCCATYTTGD
HCAARATGGCSGMY		 SELEX
Yin et al.(2017)
YY1_FL_Methyl-HT-SELEX_2 		0.761 0.912
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000032514 C2H2 ZF 207 230
ENSCINP00000032514 C2H2 ZF 235 257
ENSCINP00000032514 C2H2 ZF 263 287
ENSCINP00000032514 C2H2 ZF 293 317

Links

Other C2H2 ZF family TFs
Other Ciona intestinalis TFs

118 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R002339 Calypte anna Aan_R002339 I
AARA005669 Anopheles arabiensis AARA005669 I
ADAC007714 Anopheles darlingi ADAC007714 N
Afo_R003710 Aptenodytes forsteri Afo_R003710 I
Alligator_sinensis_CCG001127.1 Alligator sinensis Alligator_sinensis_CCG001127.1 I
Alligator_sinensis_CCG005858.1 Alligator sinensis Alligator_sinensis_CCG005858.1 I
AMAM002408 Anopheles maculatus AMAM002408 I
AMAM023294 Anopheles maculatus AMAM023294 I
AMEC020939 Anopheles melas AMEC020939 N
AMIN011055 Anopheles minimus AMIN011055 I
ANCCAN_17433 Ancylostoma caninum ANCCAN_17433 I
ANCCEY_02814 Ancylostoma ceylanicum ANCCEY_02814 I
ANCCEY_14629 Ancylostoma ceylanicum ANCCEY_14629 I
ANCDUO_03053 Ancylostoma duodenale ANCDUO_03053 I
ANCDUO_03470 Ancylostoma duodenale ANCDUO_03470 I
ANCDUO_20982 Ancylostoma duodenale ANCDUO_20982 I
ANCDUO_25190 Ancylostoma duodenale ANCDUO_25190 I
ASIM_0000264801 Anisakis simplex ASIM_0000264801 I
ASIM_0001461601 Anisakis simplex ASIM_0001461601 I
BGIBMGA001714 Bombyx mori BGIBMGA001714 I
BGIBMGA003939 Bombyx mori BGIBMGA003939 I
BGLB012440 Biomphalaria glabrata BGLB012440 I
Bm5683 Brugia malayi Bm5683 I
BTMF_0000163201 Brugia timori BTMF_0000163201 I
BTMF_0000479701 Brugia timori BTMF_0000479701 I
CGI_10000136 Crassostrea gigas CGI_10000136 I
CGI_10011697 Crassostrea gigas CGI_10011697 I
CGI_10011699 Crassostrea gigas CGI_10011699 I
CGOC_0000212501 Cylicostephanus goldi CGOC_0000212501 I
CGOC_0000700501 Cylicostephanus goldi CGOC_0000700501 I
Cmyd_10009323 Chelonia mydas Cmyd_10009323 I
D918_05574 Trichuris suis D918_05574 I
DICVIV_06455 Dictyocaulus viviparus DICVIV_06455 I
DICVIV_12912 Dictyocaulus viviparus DICVIV_12912 I
DICVIV_13767 Dictyocaulus viviparus DICVIV_13767 I
DILT_0000398501 Diphyllobothrium latum DILT_0000398501 I
ECPE_0000599301 Echinostoma caproni ECPE_0000599301 I
ECPE_0000832401 Echinostoma caproni ECPE_0000832401 I
Ehf Mus musculus ENSMUSG00000012350 D
ELF1 Anolis carolinensis ENSACAG00000000719 I
ELF1 Bos taurus ENSBTAG00000007356 I
ELF1 Canis familiaris ENSCAFG00000004817 I
ELF1 Callithrix jacchus ENSCJAG00000017782 I
ELF1 Cavia porcellus ENSCPOG00000004342 I
ELF1 Equus caballus ENSECAG00000024604 I
ELF1 Erinaceus europaeus ENSEEUG00000001555 I
ELF1 Echinops telfairi ENSETEG00000004444 I
ELF1 Felis catus ENSFCAG00000029010 I
ELF1 Homo sapiens ENSG00000120690 D
ELF1 Gallus gallus ENSGALG00000016947 I
ELF1 Gorilla gorilla ENSGGOG00000010760 I
ELF1 Loxodonta africana ENSLAFG00000032117 I
ELF1 Meleagris gallopavo ENSMGAG00000014969 I
ELF1 Myotis lucifugus ENSMLUG00000001854 I
ELF1 Macaca mulatta ENSMMUG00000007880 I
Elf1 Mus musculus ENSMUSG00000036461 D
ELF1 Ornithorhynchus anatinus ENSOANG00000013391 I
ELF1 Otolemur garnettii ENSOGAG00000006754 I
ELF1 Ochotona princeps ENSOPRG00000006878 I
ELF1 Procavia capensis ENSPCAG00000013981 I
ELF1 Pan troglodytes ENSPTRG00000005811 I
Elf1 Rattus norvegicus ENSRNOG00000011762 I
ELF1 Sorex araneus ENSSARG00000006821 I
ELF1 Sus scrofa ENSSSCG00000009440 I
ELF1 Tupaia belangeri ENSTBEG00000013824 I
ELF1 Taeniopygia guttata ENSTGUG00000012438 I
elf1 Xenopus tropicalis XB-GENE-492875 I
elf1.L Xenopus laevis XB-GENE-866208 I
elf1.S Xenopus laevis XB-GENE-17339211 I
ELF2 Vicugna pacos ENSVPAG00000003668 I
ELF4 Bos taurus ENSBTAG00000019061 I
ELF4 Canis familiaris ENSCAFG00000018735 I
ELF4 Dasypus novemcinctus ENSDNOG00000042625 I
Elf4 Dipodomys ordii ENSDORG00000014956 I
ELF4 Equus caballus ENSECAG00000025149 I
ELF4 Echinops telfairi ENSETEG00000003175 I
ELF4 Felis catus ENSFCAG00000023460 I
ELF4 Homo sapiens ENSG00000102034 D
ELF4 Gorilla gorilla ENSGGOG00000015859 I
ELF4 Microcebus murinus ENSMICG00000007427 I
ELF4 Myotis lucifugus ENSMLUG00000012862 I
Elf4 Mus musculus ENSMUSG00000031103 D
ELF4 Oryctolagus cuniculus ENSOCUG00000013238 I
ELF4 Ochotona princeps ENSOPRG00000011469 I
ELF4 Procavia capensis ENSPCAG00000008862 I
Elf4 Rattus norvegicus ENSRNOG00000005352 I
ELF4 Sus scrofa ENSSSCG00000012656 I
ELF4 Tursiops truncatus ENSTTRG00000003849 I
ELK1 Otolemur garnettii ENSOGAG00000011608 I
ELK1 Sus scrofa ENSSSCG00000012279 I
ENSAMEG00000008636 Ailuropoda melanoleuca ENSAMEG00000008636 I
ENSAMEG00000014962 Ailuropoda melanoleuca ENSAMEG00000014962 I
ENSAPLG00000005437 Anas platyrhynchos ENSAPLG00000005437 I
ENSAPLG00000008134 Anas platyrhynchos ENSAPLG00000008134 I
ENSCHOG00000011634 Choloepus hoffmanni ENSCHOG00000011634 I
ENSCING00000013583 Ciona intestinalis ENSCING00000013583 I
ENSCPOG00000022761 Cavia porcellus ENSCPOG00000022761 I
ENSCSAG00000008005 Chlorocebus sabaeus ENSCSAG00000008005 I
ENSCSAG00000017837 Chlorocebus sabaeus ENSCSAG00000017837 I
ENSCSAVG00000003616 Ciona savignyi ENSCSAVG00000003616 I
ENSDNOG00000034553 Dasypus novemcinctus ENSDNOG00000034553 I
ENSDORG00000015174 Dipodomys ordii ENSDORG00000015174 I
ENSEEUG00000012991 Erinaceus europaeus ENSEEUG00000012991 I
ENSFALG00000008008 Ficedula albicollis ENSFALG00000008008 I
ENSGGOG00000022492 Gorilla gorilla ENSGGOG00000022492 I
ENSGMOG00000005395 Gadus morhua ENSGMOG00000005395 I
ENSLACG00000006056 Latimeria chalumnae ENSLACG00000006056 I
ENSLACG00000006078 Latimeria chalumnae ENSLACG00000006078 I
ENSLAFG00000027148 Loxodonta africana ENSLAFG00000027148 I
ENSMEUG00000006389 Macropus eugenii ENSMEUG00000006389 I
ENSMICG00000016004 Microcebus murinus ENSMICG00000016004 I
ENSMODG00000010777 Monodelphis domestica ENSMODG00000010777 N
ENSMPUG00000017440 Mustela putorius furo ENSMPUG00000017440 I
ENSNLEG00000001197 Nomascus leucogenys ENSNLEG00000001197 I
ENSNLEG00000015279 Nomascus leucogenys ENSNLEG00000015279 I
ENSOANG00000021194 Ornithorhynchus anatinus ENSOANG00000021194 N
ENSOARG00000006858 Ovis aries ENSOARG00000006858 I
ENSOARG00000015356 Ovis aries ENSOARG00000015356 I
ENSOCUG00000010580 Oryctolagus cuniculus ENSOCUG00000010580 I
ENSOCUG00000021953 Oryctolagus cuniculus ENSOCUG00000021953 I
ENSORLG00000018944 Oryzias latipes ENSORLG00000018944 I
ENSP00000239882 Macaca fascicularis ENSP00000239882 I
ENSP00000239882-D1 Bos grunniens ENSP00000239882-D1 I
ENSP00000311280 Macaca fascicularis ENSP00000311280 I
ENSP00000338608-D1 Bos grunniens ENSP00000338608-D1 I
ENSPANG00000005718 Papio anubis ENSPANG00000005718 I
ENSPANG00000011469 Papio anubis ENSPANG00000011469 I
ENSPFOG00000008185 Poecilia formosa ENSPFOG00000008185 I
ENSPMAG00000009848 Petromyzon marinus ENSPMAG00000009848 I
ENSPPYG00000005309 Pongo abelii ENSPPYG00000005309 I
ENSPPYG00000020711 Pongo abelii ENSPPYG00000020711 I
ENSPSIG00000006204 Pelodiscus sinensis ENSPSIG00000006204 I
ENSPSIG00000014193 Pelodiscus sinensis ENSPSIG00000014193 I
ENSSHAG00000008931 Sarcophilus harrisii ENSSHAG00000008931 I
ENSSHAG00000009816 Sarcophilus harrisii ENSSHAG00000009816 I
ENSSTOG00000007700 Ictidomys tridecemlineatus ENSSTOG00000007700 I
ENSSTOG00000008325 Ictidomys tridecemlineatus ENSSTOG00000008325 I
ENSSTOG00000010509 Ictidomys tridecemlineatus ENSSTOG00000010509 I
ENSTBEG00000001919 Tupaia belangeri ENSTBEG00000001919 I
ENSTBEG00000008569 Tupaia belangeri ENSTBEG00000008569 I
ENSTBEG00000017653 Tupaia belangeri ENSTBEG00000017653 I
ENSTGUG00000006059 Taeniopygia guttata ENSTGUG00000006059 I
ENSTNIG00000006987 Tetraodon nigroviridis ENSTNIG00000006987 I
ENSTRUG00000004604 Takifugu rubripes ENSTRUG00000004604 I
ENSTRUG00000006311 Takifugu rubripes ENSTRUG00000006311 I
ENSTRUG00000007244 Takifugu rubripes ENSTRUG00000007244 I
ENSTSYG00000008509 Tarsius syrichta ENSTSYG00000008509 I
ENSVPAG00000006558 Vicugna pacos ENSVPAG00000006558 I
ENSXMAG00000017105 Xiphophorus maculatus ENSXMAG00000017105 N
ENSXMAG00000017942 Xiphophorus maculatus ENSXMAG00000017942 N
ENSXMAG00000018944 Xiphophorus maculatus ENSXMAG00000018944 I
ERF Callithrix jacchus ENSCJAG00000012822 I
ERF Homo sapiens ENSG00000105722 D
ETS2 Erinaceus europaeus ENSEEUG00000015949 I
ETS2 Vicugna pacos ENSVPAG00000002062 I
etv1 Gasterosteus aculeatus ENSGACG00000012802 I
ETV5 Erinaceus europaeus ENSEEUG00000003754 I
ETV5 Procavia capensis ENSPCAG00000011636 I
ETV5 Vicugna pacos ENSVPAG00000012018 I
ETV6 Erinaceus europaeus ENSEEUG00000013089 I
ETV6 Homo sapiens ENSG00000139083 D
ETV6 Tupaia belangeri ENSTBEG00000004004 I
ETV7 Tupaia belangeri ENSTBEG00000000299 I
Fev Mus musculus ENSMUSG00000055197 D
GABPA Tupaia belangeri ENSTBEG00000002362 I
gabpa.S Xenopus laevis XB-GENE-17331756 I
Gfo_R005666 Geospiza fortis Gfo_R005666 I
GPLIN_000915100 Globodera pallida GPLIN_000915100 I
Hba_08310 Heterorhabditis bacteriophora Hba_08310 I
HCOI00865000 Haemonchus contortus HCOI00865000 N
HCOI00987800 Haemonchus contortus HCOI00987800 I
HelroG169427 Helobdella robusta HelroG169427 N
HPBE_0001545001 Heligmosomoides bakeri HPBE_0001545001 I
KGM_04984 Danaus plexippus KGM_04984 I
L596_g12359 Steinernema carpocapsae L596_g12359 I
L596_g92 Steinernema carpocapsae L596_g92 I
L889_g29916 Steinernema feltiae L889_g29916 I
L898_g6107 Steinernema monticolum L898_g6107 I
LDEC022528 Leptinotarsa decemlineata LDEC022528 I
LOAG_09309 Loa loa LOAG_09309 I
LOAG_10256 Loa loa LOAG_10256 N
MCINX000664 Melitaea cinxia MCINX000664 I
MCINX004901 Melitaea cinxia MCINX004901 I
MCINX015477 Melitaea cinxia MCINX015477 I
ML46087a Mnemiopsis leidyi ML46087a I
Myotis_brandtii_ELF1_10015249 Myotis brandtii Myotis_brandtii_ELF1_10015249 I
Myotis_brandtii_ELF4_10033215 Myotis brandtii Myotis_brandtii_ELF4_10033215 I
Myotis_brandtii_ETS2_10002413 Myotis brandtii Myotis_brandtii_ETS2_10002413 I
nDi.2.2.2.g07516 Dirofilaria immitis nDi.2.2.2.g07516 I
nDi.2.2.2.g11508 Dirofilaria immitis nDi.2.2.2.g11508 N
NEMVEDRAFT_v1g201692 Nematostella vectensis NEMVEDRAFT_v1g201692 I
OESDEN_01353 Oesophagostomum dentatum OESDEN_01353 I
OESDEN_16524 Oesophagostomum dentatum OESDEN_16524 I
Ogr02837 Ophisaurus gracilis Ogr02837 I
Ogr09552 Ophisaurus gracilis Ogr09552 N
PPA20533 Pristionchus pacificus PPA20533 N
PPAI005463 Phlebotomus papatasi PPAI005463 I
PXEA_0003657701 Protopolystoma xenopodis PXEA_0003657701 I
RPRC013518 Rhodnius prolixus RPRC013518 I
scaffold216-EXSNAP2012.7 Pristionchus exspectatus scaffold216-EXSNAP2012.7 I
scaffold24-EXSNAP2012.76 Pristionchus exspectatus scaffold24-EXSNAP2012.76 N
SCUD_0001589201 Schistosoma curassoni SCUD_0001589201 I
SCUD_0001741701 Schistosoma curassoni SCUD_0001741701 I
SINV18588 Solenopsis invicta SINV18588 I
Sjc_0111690 Schistosoma japonicum Sjc_0111690 I
SMU15031575 Schmidtea mediterranea SMU15031575 I
SMUV_0000898501 Syphacia muris SMUV_0000898501 I
SPDEF Danio rerio ENSDARG00000029930 N
SPDEF Erinaceus europaeus ENSEEUG00000010400 N
SPER_0000663201 Spirometra erinaceieuropaei SPER_0000663201 I
SPER_0001543201 Spirometra erinaceieuropaei SPER_0001543201 I
SPER_0001929301 Spirometra erinaceieuropaei SPER_0001929301 I
SPER_0002229601 Spirometra erinaceieuropaei SPER_0002229601 I
SPER_0002289501 Spirometra erinaceieuropaei SPER_0002289501 I
SPER_0002333601 Spirometra erinaceieuropaei SPER_0002333601 I
SPER_0002447201 Spirometra erinaceieuropaei SPER_0002447201 I
SROB_0001733701 Schistosoma rodhaini SROB_0001733701 I
SVUK_0000970801 Strongylus vulgaris SVUK_0000970801 N
Tal_R012001 Tyto alba Tal_R012001 I
TCLT_0000333001 Thelazia callipaeda TCLT_0000333001 I
TCNE_0001894301 Toxocara canis TCNE_0001894301 I
TELCIR_12432 Teladorsagia circumcincta TELCIR_12432 I
TELCIR_20449 Teladorsagia circumcincta TELCIR_20449 I
TELCIR_21777 Teladorsagia circumcincta TELCIR_21777 I
YQE_05461 Dendroctonus ponderosae YQE_05461 I