SNAI1 (Cavia porcellus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCPOG00000026663 T090056_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Snai1
M00781_2.00 		Mus musculus
NNNTGTCANN
NNTGACANNN		 PBM
Weirauch et al.(2013)
pTH2340 		0.819 0.956
Snai1
M09002_2.00 		Mus musculus
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C 		0.819 0.956
SNAI1
M04441_2.00 		Homo sapiens
NVCACCTGYN
NRCAGGTGBN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX 		0.816 0.934
SNAI1
M04443_2.00 		Homo sapiens
TRCACCTGYN
NRCAGGTGYA		 SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX 		0.816 0.934
SNAI1
M08303_2.00 		Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN		 ChIP-seq
Schmitges et al.(2016)
O95863.MEME 		0.816 0.934
SNAI1
M08886_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C 		0.816 0.934
SNAI1
M10201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q4 		0.816 0.934
SNAI1
M10202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q6 		0.816 0.934
SNAI1
M04442_2.00 		Homo sapiens
NRCACCTGYN
NRCAGGTGYN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX 		0.816 0.934
SNAI1
M04444_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX 		0.816 0.934
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000017729 C2H2 ZF 154 176
ENSCPOP00000017729 C2H2 ZF 180 202
ENSCPOP00000017729 C2H2 ZF 208 230
ENSCPOP00000017729 C2H2 ZF 236 257

Links

Other C2H2 ZF family TFs
Other Cavia porcellus TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL001347 Aedes aegypti AAEL001347 N
AATE011073 Anopheles atroparvus AATE011073 N
AATE011230 Anopheles atroparvus AATE011230 N
ACEP15165 Atta cephalotes ACEP15165 N
ACHR000032 Anopheles christyi ACHR000032 N
ACHR010096 Anopheles christyi ACHR010096 N
ACOM033895 Anopheles coluzzii ACOM033895 N
ACUA000836 Anopheles culicifacies ACUA000836 N
ACUA024277 Anopheles culicifacies ACUA024277 N
ADAC008697 Anopheles darlingi ADAC008697 N
ADAC009393 Anopheles darlingi ADAC009393 N
AEPI009636 Anopheles epiroticus AEPI009636 N
AFAF002449 Anopheles farauti AFAF002449 N
AFAF002772 Anopheles farauti AFAF002772 N
AFUN010373 Anopheles funestus AFUN010373 N
AGAP012950 Anopheles gambiae AGAP012950 N
AMAM000172 Anopheles maculatus AMAM000172 N
AMEC000479 Anopheles melas AMEC000479 N
AMEC003904 Anopheles melas AMEC003904 N
AMEM008406 Anopheles merus AMEM008406 N
AMIN002198 Anopheles minimus AMIN002198 N
AQUA006477 Anopheles quadriannulatus AQUA006477 N
ASIS012990 Anopheles sinensis ASIS012990 N
BGIBMGA007797 Bombyx mori BGIBMGA007797 N
Cflo_10942--XP_001121936.1_APIME Camponotus floridanus Cflo_10942--XP_001121936.1_APIME N
CG4374 Drosophila melanogaster FBgn0039078 N
CLEC005025 Cimex lectularius CLEC005025 N
CLEC005028 Cimex lectularius CLEC005028 N
CPIJ015425 Culex quinquefasciatus CPIJ015425 N
CpipJ_CPIJ015425 Culex pipiens CpipJ_CPIJ015425 N
GA18142 Drosophila pseudoobscura FBgn0078150 N
GB52523 Apis mellifera GB52523 N
GD18382 Drosophila simulans FBgn0189909 N
GE23956 Drosophila yakuba FBgn0241098 N
GF18765 Drosophila ananassae FBgn0095782 N
GG12435 Drosophila erecta FBgn0104723 N
GH20801 Drosophila grimshawi FBgn0128264 N
GI10710 Drosophila mojavensis FBgn0133474 N
GJ23125 Drosophila virilis FBgn0210227 N
GK13158 Drosophila willistoni FBgn0215167 N
GL13850 Drosophila persimilis FBgn0151455 N
GM23566 Drosophila sechellia FBgn0178432 N
HHAL000145-PA Halyomorpha halys HHAL000145-PA N
HMEL006238 Heliconius melpomene HMEL006238 N
KGM_19023 Danaus plexippus KGM_19023 N
L798_13006 Zootermopsis nevadensis L798_13006 N
LCUP001485 Lucilia cuprina LCUP001485 N
LDEC003260 Leptinotarsa decemlineata LDEC003260 N
LLOJ002004 Lutzomyia longipalpis LLOJ002004 N
MCINX016666 Melitaea cinxia MCINX016666 N
MDOA009050 Musca domestica MDOA009050 N
NV22259 Nasonia vitripennis NV22259 N
PHUM535390 Pediculus humanus PHUM535390 N
PPAI008603 Phlebotomus papatasi PPAI008603 N
SINV21477 Solenopsis invicta SINV21477 N
TC013857 Tribolium castaneum TC013857 N
YQE_03596 Dendroctonus ponderosae YQE_03596 N