SNAI2 (Homo sapiens)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSG00000019549 T094783_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI2
M00220_2.00		 Homo sapiens
NHACCTGY
RCAGGTDN		 PBM
Barrera et al.(2016)
SNAI2_D119E		 (Direct) (Direct)
SNAI2
M00221_2.00		 Homo sapiens
HACYTGH
DCARGTD		 PBM
Barrera et al.(2016)
SNAI2_REF		 (Direct) (Direct)
SNAI2
M00222_2.00		 Homo sapiens
HACYTGHNNN
NNNDCARGTD		 PBM
Barrera et al.(2016)
SNAI2_T234I		 (Direct) (Direct)
SNAI2
M02873_2.00		 Homo sapiens
VCACCTGYN
NRCAGGTGB		 SELEX
Jolma et al.(2013)
SNAI2_1		 (Direct) (Direct)
SNAI2
M04392_2.00		 Homo sapiens
YGCACCTGYY
RRCAGGTGCR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_HT-SELEX		 (Direct) (Direct)
SNAI2
M04393_2.00		 Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_eDBD_Methyl-HT-SELEX		 (Direct) (Direct)
SNAI2
M04394_2.00		 Homo sapiens
YRCACCTGYY
RRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_HT-SELEX		 (Direct) (Direct)
SNAI2
M04395_2.00		 Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI2_FL_Methyl-HT-SELEX		 (Direct) (Direct)
SNAI2
M08853_2.00		 Homo sapiens
NVCACCTGYY
RRCAGGTGBN		 Misc
Kulakovskiy et al.(2013)
SNAI2_HUMAN.H11MO.0.A		 (Direct) (Direct)
SNAI2
M10102_2.00		 Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_01		 (Direct) (Direct)
SNAI2
M10103_2.00		 Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6_02		 (Direct) (Direct)
SNAI2
M10104_2.00		 Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SLUG_Q6		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Snai2
M08973_2.00 		Mus musculus
VNRCACCTGYY
RRCAGGTGYNB		 Misc
Kulakovskiy et al.(2013)
SNAI2_MOUSE.H11MO.0.A 		0.827 1.000
esg
M06050_2.00 		Drosophila melanogaster
CACCTGH
DCAGGTG		 B1H
Zhu et al.(2011)
esg_SANGER_2.5_FBgn0001981 		0.767 0.816
For this family, TFs with SR scores > 0.755 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00220_2.00 C2H2 ZF 15 37
M00220_2.00 C2H2 ZF 46 68
M00220_2.00 C2H2 ZF 72 94
M00220_2.00 C2H2 ZF 100 122
M00220_2.00 C2H2 ZF 128 149
M00221_2.00 C2H2 ZF 15 37
M00221_2.00 C2H2 ZF 46 68
M00221_2.00 C2H2 ZF 72 94
M00221_2.00 C2H2 ZF 100 122
M00221_2.00 C2H2 ZF 128 149
M00222_2.00 C2H2 ZF 15 37
M00222_2.00 C2H2 ZF 46 68
M00222_2.00 C2H2 ZF 72 94
M00222_2.00 C2H2 ZF 100 122
M00222_2.00 C2H2 ZF 128 149

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000020945 C2H2 ZF 128 150
ENSP00000020945 C2H2 ZF 159 181
ENSP00000020945 C2H2 ZF 185 207
ENSP00000020945 C2H2 ZF 213 235
ENSP00000020945 C2H2 ZF 241 262
ENSP00000380034 C2H2 ZF 128 150
ENSP00000380034 C2H2 ZF 159 181
ENSP00000380034 C2H2 ZF 185 207
ENSP00000380034 C2H2 ZF 213 235
ENSP00000380034 C2H2 ZF 241 262

Links

Other C2H2 ZF family TFs
Other Homo sapiens TFs

103 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA021811 Oryza indica BGIOSGA021811 N 0.000
BGIOSGA021812 Oryza indica BGIOSGA021812 N 0.000
BGIOSGA021814 Oryza indica BGIOSGA021814 N 0.000
F775_00072 Aegilops tauschii F775_00072 N 0.000
F775_03070 Aegilops tauschii F775_03070 I 0.000
F775_23221 Aegilops tauschii F775_23221 N 0.000
F775_23301 Aegilops tauschii F775_23301 N 0.000
F775_24973 Aegilops tauschii F775_24973 N 0.000
GRMZM2G121111 Zea mays GRMZM2G121111 I 0.000
LPERR06G04390 Leersia perrieri LPERR06G04390 N 0.000
LPERR06G04400 Leersia perrieri LPERR06G04400 N 0.000
LPERR10G06560 Leersia perrieri LPERR10G06560 N 0.000
MLOC_10707 Hordeum vulgare MLOC_10707 N 0.000
MLOC_51337 Hordeum vulgare MLOC_51337 N 0.000
OB06G14480 Oryza brachyantha OB06G14480 N 0.000
OGLUM06G05040 Oryza glumaepatula OGLUM06G05040 N 0.000
ONIVA06G15060 Oryza nivara ONIVA06G15060 N 0.000
ONIVA06G15070 Oryza nivara ONIVA06G15070 N 0.000
OPUNC06G04640 Oryza punctata OPUNC06G04640 I 0.000
ORGLA06G0044500 Oryza glaberrima ORGLA06G0044500 N 0.000
ORUFI06G04920 Oryza rufipogon ORUFI06G04920 N 0.000
Pavir.Ca01208 Panicum virgatum Pavir.Ca01208 N 0.000
Pavir.Ca01211 Panicum virgatum Pavir.Ca01211 N 0.000
Pavir.J00200 Panicum virgatum Pavir.J00200 N 0.000
Pavir.J00203 Panicum virgatum Pavir.J00203 N 0.000
Sb01g029290 Sorghum bicolor Sb01g029290 N 0.000
Sb10g005020 Sorghum bicolor Sb10g005020 I 0.000
Sb10g006570 Sorghum bicolor Sb10g006570 I 0.000
Sb10g007420 Sorghum bicolor Sb10g007420 N 0.000
Sb10g009580 Sorghum bicolor Sb10g009580 I 0.000
Sb10g009650 Sorghum bicolor Sb10g009650 N 0.000
Traes_1AL_FF8F7A939 Triticum aestivum Traes_1AL_FF8F7A939 N 0.000
Traes_7AS_6A126F5F5 Triticum aestivum Traes_7AS_6A126F5F5 N 0.000
TRIUR3_31433 Triticum urartu TRIUR3_31433 N 0.000
TRIUR3_33433 Triticum urartu TRIUR3_33433 N 0.000
TRIUR3_35104 Triticum urartu TRIUR3_35104 I 0.000