gfi1ab (Gasterosteus aculeatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSGACG00000004257 T095569_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.807 0.971
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.807 0.971
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.807 0.971
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.807 0.971
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.807 0.971
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.807 0.971
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.807 0.971
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.807 0.971
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.805 0.964
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.774 0.855
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.773 0.870
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.773 0.870
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.773 0.870
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.773 0.870
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.773 0.870
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.773 0.870
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.773 0.870
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.771 0.862
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.771 0.862
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.771 0.862
GFI1
M00237_2.00 		Homo sapiens
ATATCAVD
HBTGATAT		 PBM
Barrera et al.(2016)
GFI1_N382S 		0.771 0.964
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000005607 C2H2 ZF 229 252
ENSGACP00000005607 C2H2 ZF 258 280
ENSGACP00000005607 C2H2 ZF 286 308
ENSGACP00000005607 C2H2 ZF 314 336
ENSGACP00000005607 C2H2 ZF 342 364
ENSGACP00000005607 C2H2 ZF 370 393

Links

Other C2H2 ZF family TFs
Other Gasterosteus aculeatus TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000390701 Angiostrongylus cantonensis ACAC_0000390701 I
ACEP10202 Atta cephalotes ACEP10202 I
Alligator_sinensis_CCG011163.1 Alligator sinensis Alligator_sinensis_CCG011163.1 I
ASIM_0000067201 Anisakis simplex ASIM_0000067201 N
ASU_01158 Ascaris suum ASU_01158 N
Bm2735 Brugia malayi Bm2735 N
CBG02112 Caenorhabditis briggsae CBG02112 N
CBN13062 Caenorhabditis brenneri CBN13062 N
Cflo_11933--XP_001122281.1_APIME Camponotus floridanus Cflo_11933--XP_001122281.1_APIME I
CJA03864 Caenorhabditis japonica CJA03864 N
Cmyd_10014342 Chelonia mydas Cmyd_10014342 I
CRE07382 Caenorhabditis remanei CRE07382 N
DME_0000232301 Dracunculus medinensis DME_0000232301 N
EEL_0000426601 Elaeophora elaphi EEL_0000426601 N
ENSCSAG00000000087 Chlorocebus sabaeus ENSCSAG00000000087 I
ENSCSAG00000000172 Chlorocebus sabaeus ENSCSAG00000000172 I
ENSFALG00000006103 Ficedula albicollis ENSFALG00000006103 I
ENSFCAG00000028313 Felis catus ENSFCAG00000028313 I
ENSLACG00000011363 Latimeria chalumnae ENSLACG00000011363 I
ENSMEUG00000003022 Macropus eugenii ENSMEUG00000003022 I
ENSMICG00000002851 Microcebus murinus ENSMICG00000002851 I
ENSMMUG00000008971 Macaca mulatta ENSMMUG00000008971 I
ENSMPUG00000019387 Mustela putorius furo ENSMPUG00000019387 I
ENSMPUG00000019473 Mustela putorius furo ENSMPUG00000019473 I
ENSNLEG00000013637 Nomascus leucogenys ENSNLEG00000013637 I
ENSP00000302189 Macaca fascicularis ENSP00000302189 I
ENSP00000358519-D1 Bos grunniens ENSP00000358519-D1 I
ENSP00000405915 Macaca fascicularis ENSP00000405915 I
ENSPANG00000001481 Papio anubis ENSPANG00000001481 I
ENSPANG00000011970 Papio anubis ENSPANG00000011970 I
ENSPPYG00000000632 Pongo abelii ENSPPYG00000000632 I
ENSPPYG00000000988 Pongo abelii ENSPPYG00000000988 I
ENSSHAG00000006613 Sarcophilus harrisii ENSSHAG00000006613 I
ENSSHAG00000015472 Sarcophilus harrisii ENSSHAG00000015472 I
ENSSTOG00000019698 Ictidomys tridecemlineatus ENSSTOG00000019698 I
ENSSTOG00000027988 Ictidomys tridecemlineatus ENSSTOG00000027988 I
ENSTSYG00000000582 Tarsius syrichta ENSTSYG00000000582 I
EVEC_0000118201 Enterobius vermicularis EVEC_0000118201 N
GB49291 Apis mellifera GB49291 I
GB53325 Apis mellifera GB53325 I
HelroG138545 Helobdella robusta HelroG138545 I
hlh-15 Caenorhabditis elegans WBGene00001959 N
HPLM_0001523301 Haemonchus placei HPLM_0001523301 N
Hsal_11874--XP_001122281.1_APIME Harpegnathos saltator Hsal_11874--XP_001122281.1_APIME I
LOAG_02658 Loa loa LOAG_02658 N
nAv.1.0.1.g06563 Acanthocheilonema viteae nAv.1.0.1.g06563 N
nDi.2.2.2.g01604 Dirofilaria immitis nDi.2.2.2.g01604 N
NHLH1 Bos taurus ENSBTAG00000020027 I
NHLH1 Canis familiaris ENSCAFG00000023513 I
NHLH1 Callithrix jacchus ENSCJAG00000005775 I
NHLH1 Cavia porcellus ENSCPOG00000021596 I
NHLH1 Dasypus novemcinctus ENSDNOG00000038600 I
NHLH1 Equus caballus ENSECAG00000004612 I
NHLH1 Echinops telfairi ENSETEG00000009677 I
NHLH1 Homo sapiens ENSG00000171786 D
NHLH1 Gorilla gorilla ENSGGOG00000015736 I
NHLH1 Loxodonta africana ENSLAFG00000011163 I
NHLH1 Microcebus murinus ENSMICG00000012700 I
NHLH1 Macaca mulatta ENSMMUG00000021865 I
NHLH1 Monodelphis domestica ENSMODG00000024591 I
Nhlh1 Mus musculus ENSMUSG00000051251 D
NHLH1 Otolemur garnettii ENSOGAG00000010592 I
NHLH1 Procavia capensis ENSPCAG00000009061 I
NHLH1 Pan troglodytes ENSPTRG00000001551 I
NHLH1 Pteropus vampyrus ENSPVAG00000007987 I
Nhlh1 Rattus norvegicus ENSRNOG00000005166 I
NHLH1 Sus scrofa ENSSSCG00000006384 I
NHLH1 Taeniopygia guttata ENSTGUG00000013389 I
NHLH1 Tursiops truncatus ENSTTRG00000001840 I
nhlh1 Xenopus tropicalis XB-GENE-989790 I
nhlh1.L Xenopus laevis XB-GENE-989792 I
nhlh1.S Xenopus laevis XB-GENE-6252028 I
NHLH2 Anolis carolinensis ENSACAG00000003304 I
NHLH2 Bos taurus ENSBTAG00000015067 I
NHLH2 Canis familiaris ENSCAFG00000009767 I
NHLH2 Callithrix jacchus ENSCJAG00000012807 I
NHLH2 Cavia porcellus ENSCPOG00000026593 I
NHLH2 Dasypus novemcinctus ENSDNOG00000008961 I
NHLH2 Homo sapiens ENSG00000177551 D
NHLH2 Gorilla gorilla ENSGGOG00000008283 I
NHLH2 Loxodonta africana ENSLAFG00000007456 I
NHLH2 Myotis lucifugus ENSMLUG00000015989 I
NHLH2 Monodelphis domestica ENSMODG00000023228 I
Nhlh2 Mus musculus ENSMUSG00000048540 D
NHLH2 Ornithorhynchus anatinus ENSOANG00000009820 I
NHLH2 Oryctolagus cuniculus ENSOCUG00000015744 I
NHLH2 Otolemur garnettii ENSOGAG00000034540 I
NHLH2 Ochotona princeps ENSOPRG00000006661 I
NHLH2 Pan troglodytes ENSPTRG00000001149 I
NHLH2 Pteropus vampyrus ENSPVAG00000012688 I
Nhlh2 Rattus norvegicus ENSRNOG00000054375 I
NHLH2 Sus scrofa ENSSSCG00000006744 I
NHLH2 Tursiops truncatus ENSTTRG00000003112 I
nOo.2.0.1.g02404 Onchocerca ochengi nOo.2.0.1.g02404 N
NV10733 Nasonia vitripennis NV10733 I
OFLC_0001357601 Onchocerca flexuosa OFLC_0001357601 N
Ppa-hlh-15 Pristionchus pacificus PPA18782 N
PTRK_0001259000 Parastrongyloides trichosuri PTRK_0001259000 N
scaffold4-EXSNAP2012.68 Pristionchus exspectatus scaffold4-EXSNAP2012.68 N
TCNE_0000157901 Toxocara canis TCNE_0000157901 N
WBGene00237417 Onchocerca volvulus WBGene00237417 N
WUBG_01613 Wuchereria bancrofti WUBG_01613 N