snai1a (Gasterosteus aculeatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSGACG00000010147 T095658_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Snai1
M00781_2.00 		Mus musculus
NNNTGTCANN
NNTGACANNN		 PBM
Weirauch et al.(2013)
pTH2340 		0.779 0.857
Snai1
M09002_2.00 		Mus musculus
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C 		0.779 0.857
SNAI1
M04441_2.00 		Homo sapiens
NVCACCTGYN
NRCAGGTGBN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX 		0.779 0.846
SNAI1
M04443_2.00 		Homo sapiens
TRCACCTGYN
NRCAGGTGYA		 SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX 		0.779 0.846
SNAI1
M08303_2.00 		Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN		 ChIP-seq
Schmitges et al.(2016)
O95863.MEME 		0.779 0.846
SNAI1
M08886_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C 		0.779 0.846
SNAI1
M10201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q4 		0.779 0.846
SNAI1
M10202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q6 		0.779 0.846
SNAI1
M04442_2.00 		Homo sapiens
NRCACCTGYN
NRCAGGTGYN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX 		0.779 0.846
SNAI1
M04444_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX 		0.779 0.846
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000013400 C2H2 ZF 141 163
ENSGACP00000013400 C2H2 ZF 167 189
ENSGACP00000013400 C2H2 ZF 195 217
ENSGACP00000013400 C2H2 ZF 223 244

Links

Other C2H2 ZF family TFs
Other Gasterosteus aculeatus TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R015780 Calypte anna Aan_R015780 N
Alligator_sinensis_CCG021728.1 Alligator sinensis Alligator_sinensis_CCG021728.1 N
Brh_R000153 Buceros rhinoceros Brh_R000153 N
Cmyd_10020478 Chelonia mydas Cmyd_10020478 N
ENSACAG00000001074 Anolis carolinensis ENSACAG00000001074 N
ENSAMXG00000025035 Astyanax mexicanus ENSAMXG00000025035 N
ENSCSAG00000015605 Chlorocebus sabaeus ENSCSAG00000015605 N
ENSDORG00000000484 Dipodomys ordii ENSDORG00000000484 N
ENSFALG00000010699 Ficedula albicollis ENSFALG00000010699 N
ENSGACG00000011250 Gasterosteus aculeatus ENSGACG00000011250 N
ENSGMOG00000017750 Gadus morhua ENSGMOG00000017750 N
ENSMEUG00000011902 Macropus eugenii ENSMEUG00000011902 N
ENSMGAG00000015550 Meleagris gallopavo ENSMGAG00000015550 N
ENSMPUG00000007096 Mustela putorius furo ENSMPUG00000007096 N
ENSNLEG00000009590 Nomascus leucogenys ENSNLEG00000009590 N
ENSOARG00000016025 Ovis aries ENSOARG00000016025 N
ENSP00000360069 Macaca fascicularis ENSP00000360069 N
ENSP00000360069-D1 Bos grunniens ENSP00000360069-D1 N
ENSPANG00000000370 Papio anubis ENSPANG00000000370 N
ENSPFOG00000008819 Poecilia formosa ENSPFOG00000008819 N
ENSPPYG00000011183 Pongo abelii ENSPPYG00000011183 N
ENSPSIG00000005947 Pelodiscus sinensis ENSPSIG00000005947 N
ENSSHAG00000011841 Sarcophilus harrisii ENSSHAG00000011841 N
ENSSTOG00000020220 Ictidomys tridecemlineatus ENSSTOG00000020220 N
ENSTGUG00000008011 Taeniopygia guttata ENSTGUG00000008011 N
ENSXMAG00000013985 Xiphophorus maculatus ENSXMAG00000013985 N
Gfo_R009549 Geospiza fortis Gfo_R009549 N
Myotis_brandtii_ZNF831_10023550 Myotis brandtii Myotis_brandtii_ZNF831_10023550 N
Ogr15311 Ophisaurus gracilis Ogr15311 N
Pvit_17317 Pogona vitticeps Pvit_17317 N
Tal_R006729 Tyto alba Tal_R006729 N
Zfp831 Mus musculus ENSMUSG00000050600 N
Zfp831 Rattus norvegicus ENSRNOG00000024693 N
ZNF831 Dasypus novemcinctus ENSDNOG00000039522 N
ZNF831 Myotis lucifugus ENSMLUG00000002710 N
ZNF831 Loxodonta africana ENSLAFG00000027534 N
ZNF831 Oryctolagus cuniculus ENSOCUG00000016865 N
ZNF831 Otolemur garnettii ENSOGAG00000026401 N
ZNF831 Bos taurus ENSBTAG00000011940 N
ZNF831 Canis familiaris ENSCAFG00000012242 N
ZNF831 Cavia porcellus ENSCPOG00000004730 N
ZNF831 Felis catus ENSFCAG00000000850 N
ZNF831 Homo sapiens ENSG00000124203 N
ZNF831 Gorilla gorilla ENSGGOG00000016623 N
ZNF831 Tursiops truncatus ENSTTRG00000009388 N
ZNF831 Pan troglodytes ENSPTRG00000013683 N
ZNF831 Pteropus vampyrus ENSPVAG00000005227 N
ZNF831 Sus scrofa ENSSSCG00000007526 N