gfi1aa (Gasterosteus aculeatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSGACG00000015674 T095737_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.807 0.942
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.807 0.942
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.807 0.942
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.807 0.942
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.807 0.942
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.807 0.942
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.807 0.942
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.807 0.942
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.805 0.935
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.775 0.870
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.775 0.870
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.775 0.870
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.775 0.870
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.775 0.870
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.775 0.870
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.773 0.862
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.773 0.862
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.773 0.862
GFI1
M00237_2.00 		Homo sapiens
ATATCAVD
HBTGATAT		 PBM
Barrera et al.(2016)
GFI1_N382S 		0.771 0.935
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.765 0.862
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.765 0.833
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000020685 C2H2 ZF 230 253
ENSGACP00000020685 C2H2 ZF 259 281
ENSGACP00000020685 C2H2 ZF 287 309
ENSGACP00000020685 C2H2 ZF 315 337
ENSGACP00000020685 C2H2 ZF 343 365
ENSGACP00000020685 C2H2 ZF 371 394
ENSGACP00000020686 C2H2 ZF 162 185
ENSGACP00000020686 C2H2 ZF 191 213
ENSGACP00000020686 C2H2 ZF 219 241
ENSGACP00000020686 C2H2 ZF 247 269
ENSGACP00000020686 C2H2 ZF 275 297
ENSGACP00000020686 C2H2 ZF 303 326

Links

Other C2H2 ZF family TFs
Other Gasterosteus aculeatus TFs

138 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O9_03240 Exophiala aquamarina A1O9_03240 I
ACLA_015940 Aspergillus clavatus CADACLAG00001153 I
AFUA_5G12930 Aspergillus fumigatus CADAFUAG00006653 I
ANIA_06846 Aspergillus nidulans CADANIAG00007644 D
CERSUDRAFT_114532 Ceriporiopsis subvermispora CERSUDRAFT_114532 I
CFIO01_07975 Colletotrichum fioriniae CFIO01_07975 I
EURHEDRAFT_226967 Aspergillus ruber EURHEDRAFT_226967 I
e_gw1.00710.51.1 Aspergillus carbonarius e_gw1.00710.51.1 I
FOMPIDRAFT_1024907 Fomitopsis pinicola FOMPIDRAFT_1024907 I
GLRG_00281 Colletotrichum graminicola GLRG_00281 I
GNLVRS01_PISO0I18070g Millerozyma farinosa GNLVRS01_PISO0I18070g N
GNLVRS01_PISO0J19831g Millerozyma farinosa GNLVRS01_PISO0J19831g N
HMPREF1624_01132 Sporothrix schenckii HMPREF1624_01132 I
JAAARDRAFT_136956 Jaapia argillacea JAAARDRAFT_136956 I
KUCA_T00005789001 Kuraishia capsulata KUCA_T00005789001 I
M404DRAFT_130508 Pisolithus tinctorius M404DRAFT_130508 I
MBM_00253 Marssonina brunnea MBM_00253 I
PGUG_05832 Candida guilliermondii PGUG_05832 I
PGUG_05832 Meyerozyma guilliermondii PGUG_05832 I
PISMIDRAFT_675317 Pisolithus microcarpus PISMIDRAFT_675317 I
SPBR_08138 Sporothrix brasiliensis SPBR_08138 N
TRIVIDRAFT_68874 Trichoderma virens TRIVIDRAFT_68874 N
Z517_07459 Fonsecaea pedrosoi Z517_07459 N
Z518_09601 Rhinocladiella mackenziei Z518_09601 N
ZBAI_02843 Zygosaccharomyces bailii ZBAI_02843 I
ZBAI_09101 Zygosaccharomyces bailii ZBAI_09101 I